Blac032622.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990066.1:6085830-6089045[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0033 0.3 12.6 0.8 2 23 32 54 31 54 0.96 2 17 1.5 1.4e+02 4.3 1.4 3 23 80 100 78 100 0.94 3 17 0.00046 0.042 15.3 0.2 1 23 104 126 104 126 0.98 4 17 0.05 4.6 8.9 1.7 2 23 161 183 160 183 0.94 5 17 2e-06 0.00019 22.7 2.3 2 23 191 213 191 213 0.98 6 17 0.00014 0.012 17.0 1.7 1 23 219 241 219 241 0.97 7 17 3.5e-07 3.2e-05 25.1 1.9 1 23 247 269 247 269 0.98 8 17 0.052 4.7 8.9 7.3 2 23 283 305 275 305 0.95 9 17 0.0058 0.53 11.9 0.2 2 23 333 355 332 355 0.95 10 17 0.045 4.1 9.1 0.3 2 23 380 401 379 401 0.95 11 17 0.00014 0.012 17.0 0.3 1 23 405 427 405 427 0.98 12 17 0.0033 0.3 12.7 1.4 1 23 432 455 432 455 0.94 13 17 0.00078 0.071 14.6 0.8 2 23 465 487 464 487 0.96 14 17 0.00099 0.091 14.3 0.5 1 23 494 517 494 517 0.97 15 17 1.2e-05 0.001 20.4 1.1 1 23 523 545 523 545 0.97 16 17 8.8e-05 0.008 17.6 2.4 1 23 551 574 551 574 0.95 17 17 0.00022 0.02 16.3 1.0 1 23 580 603 580 603 0.97
Sequence Information
- Coding Sequence
- ATGCAATCGGCACACGCCAGTGCTGAGTATCATGCAATGGGGTTAGCCCAAACTCGCGATAACATATTTTGCAAATTGGACACAACAGACCTAAAATGCAACTTCTGCGAGCAGAACTTTGACTTATTATCGAGTTTGAAGGAACATCTGAATAAGGAGCATGATGTGAAATTCCTCCCTGAAGAGAAAAATTACATGATCGAGTTCAAGCTGAGCGACGAAGGTGAGGTTATGAACTGTGCTCTATGCAGCTCCACGTTCGAGGCGTTCAAGTCGTTAATGCAACATATGCACGAACACTACAGGAACTTTATATGCGAGGAATGCGATGGTGGTTTCATAAACGAGAGAAAGTTGGTCAAACATCTGAAAACCCACAAGACGGGCACTTTTAAATGCTCGTACTGCATGAAAGAGTTTTTAACTTACATAAGACAATTAAAGCATGAGAAACGTCATAACGTTCTTCCTCGAACCAGCAAGTGTCCCCTCTGTGAGAAGATATTCATGAGCCACACTCTCAGGAATAGACACTTAGTAAAAGACCATAACTCCACCTCTATGACTCGCAAGTGCAATATATGCGACAAAGTATACGCAACGAAGAAACATCTCTCGAATCACATAAGAAAAGTGCATCTAATGGAGAAAAACCACAAATGTTCTGAGTGTGAGGCAGCTTTCTTCGATAAATACTCGTTGAATCAGCATATGGTCCGGCATACAGGCGAGAAGGCCCACGAATGTACAGAGTGTAACAAAGCTTTCGCTCAAAAGAATAGCCTGAGAGAACATATGAGGATGCACAACAATGACAGGAGGTTTAAGTGTGAACTATGTGGCATCCAATGCTGTTATTGCCGAGAGAACTTCCCGAAATTGTCACTTTTGAGGGAGCACATGCAGTCGGCACACAGCAACGATGAGTATTGCGCAATGGATGTGGCTAAATCAAATCGCGGTAACATCTTTTGCAAATTGGACATAACAGAACTAAAATGTAACTTGTGCGAGCAGAACTTTGACTTATTATCGAGTTTAAACGAACATCTAATAAAGGGGCATGATGTGAATTTCGTGCCCGAAGATAAAAGATATATAATGGAGTTCAAGCTAAGTGACGACGGCGAGGTTATGACCTGTGCCCTATGTGGCTACACTTTCGAGGCGTTTCCGACGTTGCTGCAACATATGCATGGACACTACAGGAATTTTATATGCGAACAATGCGATGCTGGTTTCATAAACCAGCGCAAGTTGATGACACATCAGAAAATCCACGAGACGGGCACTTTTGAATGCTCGTTCTGCCCCAAAGTGTTCACAAGTTCAGTGAAGAAAACGAGTCACGAGAAGTACGTTCATAAGAATGTTGCTGGGAAACGGAACAAGAAGTGTCCCCTCTGCGTGATGTCATTCACGGACTACTATAACAGGAATAGGCACATATTAAAAGACCACAAGTCTACCACTACGACTTACAAGTGCAATATATGCGACAAAGTATACCTATTGAAGTCGCGGCTCTCGAATCACATACGGGAAGTGCATCTAATGGAGAGAAACCACAAATGTCGTGAGTGTGGGGCCGCTTTCGTCACAAACTCTAAACTGAATCAGCATATGGTCCGGCATACAGACGAGAAGACCCACGAATGTTCAATGTGTAACAAAGCTTTCCGCCGAAAGAAGGACCTGAGTGATCATAATATGAGGATTCACATCAATGACAGGAGTTTTAAGTGTGAACTATGTGGTTCGGCGTTCGTAGAAAAGCGCCGTCTGAAGCGTCATATGTTGTCAAAACATGGTGTAGTTTTAGCGGATATTAACCAAGCGAAGCTGAGTCCAAAGGCCTACGTCGTGAAACGTTGA
- Protein Sequence
- MQSAHASAEYHAMGLAQTRDNIFCKLDTTDLKCNFCEQNFDLLSSLKEHLNKEHDVKFLPEEKNYMIEFKLSDEGEVMNCALCSSTFEAFKSLMQHMHEHYRNFICEECDGGFINERKLVKHLKTHKTGTFKCSYCMKEFLTYIRQLKHEKRHNVLPRTSKCPLCEKIFMSHTLRNRHLVKDHNSTSMTRKCNICDKVYATKKHLSNHIRKVHLMEKNHKCSECEAAFFDKYSLNQHMVRHTGEKAHECTECNKAFAQKNSLREHMRMHNNDRRFKCELCGIQCCYCRENFPKLSLLREHMQSAHSNDEYCAMDVAKSNRGNIFCKLDITELKCNLCEQNFDLLSSLNEHLIKGHDVNFVPEDKRYIMEFKLSDDGEVMTCALCGYTFEAFPTLLQHMHGHYRNFICEQCDAGFINQRKLMTHQKIHETGTFECSFCPKVFTSSVKKTSHEKYVHKNVAGKRNKKCPLCVMSFTDYYNRNRHILKDHKSTTTTYKCNICDKVYLLKSRLSNHIREVHLMERNHKCRECGAAFVTNSKLNQHMVRHTDEKTHECSMCNKAFRRKKDLSDHNMRIHINDRSFKCELCGSAFVEKRRLKRHMLSKHGVVLADINQAKLSPKAYVVKR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -