Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990065.1:13950523-13952157[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.5e-06 0.00041 21.7 0.7 2 23 75 97 74 97 0.96

2 15 2.6e-05 0.0024 19.3 2.4 2 23 105 127 104 127 0.96

3 15 0.077 7 8.3 0.5 3 23 135 156 133 156 0.90

4 15 1.8e-07 1.6e-05 26.1 1.0 2 23 164 186 163 186 0.96

5 15 6.9e-05 0.0063 17.9 1.9 2 23 194 216 193 216 0.95

6 15 0.0019 0.17 13.4 1.1 1 23 223 246 223 246 0.94

7 15 9e-06 0.00082 20.7 0.9 3 23 253 274 252 274 0.97

8 15 0.00056 0.051 15.1 0.5 1 23 289 312 289 312 0.95

9 15 6.8e-05 0.0062 18.0 2.8 2 23 320 342 320 342 0.96

10 15 2.9e-06 0.00027 22.2 2.6 2 23 348 370 348 370 0.97

11 15 0.0068 0.62 11.7 6.0 2 23 378 400 377 400 0.96

12 15 0.00095 0.087 14.4 5.6 1 23 406 428 406 428 0.96

13 15 0.0028 0.25 12.9 5.6 1 23 434 457 434 457 0.97

14 15 0.0017 0.16 13.5 2.7 1 23 465 487 465 488 0.96

15 15 0.00097 0.088 14.3 0.4 3 21 502 520 501 521 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.5e-06	0.00041	21.7	0.7	2	23	75	97	74	97	0.96
2	15	2.6e-05	0.0024	19.3	2.4	2	23	105	127	104	127	0.96
3	15	0.077	7	8.3	0.5	3	23	135	156	133	156	0.90
4	15	1.8e-07	1.6e-05	26.1	1.0	2	23	164	186	163	186	0.96
5	15	6.9e-05	0.0063	17.9	1.9	2	23	194	216	193	216	0.95
6	15	0.0019	0.17	13.4	1.1	1	23	223	246	223	246	0.94
7	15	9e-06	0.00082	20.7	0.9	3	23	253	274	252	274	0.97
8	15	0.00056	0.051	15.1	0.5	1	23	289	312	289	312	0.95
9	15	6.8e-05	0.0062	18.0	2.8	2	23	320	342	320	342	0.96
10	15	2.9e-06	0.00027	22.2	2.6	2	23	348	370	348	370	0.97
11	15	0.0068	0.62	11.7	6.0	2	23	378	400	377	400	0.96
12	15	0.00095	0.087	14.4	5.6	1	23	406	428	406	428	0.96
13	15	0.0028	0.25	12.9	5.6	1	23	434	457	434	457	0.97
14	15	0.0017	0.16	13.5	2.7	1	23	465	487	465	488	0.96
15	15	0.00097	0.088	14.3	0.4	3	21	502	520	501	521	0.94

Sequence Information

Coding Sequence: ATGAACCACGACATCGAGCAGGTCTGCATAAAGCCCGAAATCCAGGACATGAGGATGGTAATCAAAGTCGAAGAGGAAACAGATCCTGATCTAGAGCCGGAGGCCGTGTTCGGTATGAAACAGAGACTTGGCGACAACCAAGAGTGGTGTCCTACCAGTGACGCCGCCCAAAGGCTAGAGTTCAGTGGAAAGGTGTACGAGAATGGAAAGATTAACAGGATCCAGTGCCCCCAGTGTGATAATACGTTTAAGAACAGGGCGAATCTGAAACAACATCTGAAGTACGTACACTCCTCTGAGGAAGACATAGTTGAATGCAATCAGTGTTATCGGACATTCAAATCCAAAGCGCATCTCAGATCGCACCTAAACTCCGTCCACGCAGCCGTGAAGCCAATCATCTGCGATATATGTCTGAAACCCTTCCTAAACAAGAAGAAGCTAAGCAACCACATGTTCTTCGCTCACCCCAAGCCTGAGGAAACAGTCAAGTGCAAAATCTGCGACAAATCCTACAAGCAACTGTACAACTTGAAGATCCATATGCGACAGGTCCATCCGTCCGAGGAAAAGTCGGTACAATGCGAGCATTGCAGCAAGGACTTCAAGAACAGCATGCTCCTCCAACGCCACGTCAAATGGAGTCATCCGGAAGACGGTATGGTCTACAAATGTCAGGAATGCGGGAGGACGTTACCTTCTCTCGCTTGCTACAAGAAACATGTGGAAAACGTTCACACTAATATGGAAGCGGATTGCTCGTTATGCGGCAAAGTTTTCAAAACTGGCAAGACTCTGCAGCGGCATATAAAAAGCATGCACAATGGAGAAAGAGCCGAGCCTAAGCCTTTAAAATTGGGAGATTATAAATGTCAGGAGTGTGACAAACAGTATGCAACAGTGACAGCGTTGAATTGGCATTTCGAACGCAACCATTCCGAGAACAAACGAAGCAATTACTGCCATATATGTGATAAGGAACTGTCGGACCATGGCAGTCTGAAGCGCCATATGGATACAATGCATTCCTCGAACACGGCCCGGTGTAGTATATGCAATAAGATCTTCAAGTCTCACATCAATCTGCAGAGACATATCAGAGTGACACACGCGCCGCCCGAAGCGTCCCAAAGCTGCGATATCTGCCACAAATCTTTCAAGTGTTCCATGCATCTCCGGATCCATATAAACTCTGTCCATCCGAAGGAAGGGAAGCACTTCTGTGATATATGCAACAAGGAGTTCAACTCGAAGAAGTACATGTTGAAACATAAGAAGACGCATGTGGCCAGCAAGGAGTTTCCGTGCCATTTCTGTCATAAACTCTACAAGTCTCAGAACGACGTGAAGAAACATATAAAACGTGTTCACAACATACTGCTGTACAACATAtacaaatgtacaaagtgtgacGTTGAGTTCTCGAGTGTGAATACTTTGGATAATCATAGGAAACTGCACCATAGGGACTCCATAGATTCGCCACCAATGACGACAGCCAATTGTACCAAATGCGGGGAGGTTTTCTCGGACGATACCCAGCTGCATTCGCACATTTTGAAGTGTGGGAACACTGAGGAAGAGACACATTTCGTTGAAGTGAAAGTGGAGATCGAAGAACCGGATGATACGTAG
Protein Sequence: MNHDIEQVCIKPEIQDMRMVIKVEEETDPDLEPEAVFGMKQRLGDNQEWCPTSDAAQRLEFSGKVYENGKINRIQCPQCDNTFKNRANLKQHLKYVHSSEEDIVECNQCYRTFKSKAHLRSHLNSVHAAVKPIICDICLKPFLNKKKLSNHMFFAHPKPEETVKCKICDKSYKQLYNLKIHMRQVHPSEEKSVQCEHCSKDFKNSMLLQRHVKWSHPEDGMVYKCQECGRTLPSLACYKKHVENVHTNMEADCSLCGKVFKTGKTLQRHIKSMHNGERAEPKPLKLGDYKCQECDKQYATVTALNWHFERNHSENKRSNYCHICDKELSDHGSLKRHMDTMHSSNTARCSICNKIFKSHINLQRHIRVTHAPPEASQSCDICHKSFKCSMHLRIHINSVHPKEGKHFCDICNKEFNSKKYMLKHKKTHVASKEFPCHFCHKLYKSQNDVKKHIKRVHNILLYNIYKCTKCDVEFSSVNTLDNHRKLHHRDSIDSPPMTTANCTKCGEVFSDDTQLHSHILKCGNTEEETHFVEVKVEIEEPDDT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00208102; iTF_00208120; iTF_00209087;
90% Identity: iTF_00208120;
80% Identity: iTF_00209087;