Blac031987.2
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990065.1:12323509-12325911[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.7e-06 0.00034 21.9 4.1 1 23 6 29 6 29 0.95 2 20 0.0012 0.11 14.1 0.2 2 23 35 57 34 57 0.94 3 20 1.2e-05 0.0011 20.3 0.2 2 23 66 88 66 88 0.97 4 20 9.1e-07 8.3e-05 23.8 1.2 2 23 97 119 96 119 0.95 5 20 2.3e-05 0.0021 19.4 0.5 2 23 127 149 127 149 0.95 6 20 3.1e-06 0.00028 22.2 1.0 2 23 157 179 156 179 0.96 7 20 1e-06 9.3e-05 23.7 1.6 1 23 185 208 185 208 0.98 8 20 0.002 0.19 13.3 0.9 1 23 216 239 216 239 0.95 9 20 2.6e-05 0.0024 19.3 2.8 1 23 264 287 264 287 0.97 10 20 0.014 1.3 10.7 0.3 1 23 322 345 322 345 0.97 11 20 0.19 17 7.1 0.6 2 21 353 372 352 373 0.93 12 20 0.019 1.8 10.2 1.5 3 23 383 404 382 404 0.96 13 20 0.00035 0.032 15.7 5.0 1 23 427 450 427 450 0.97 14 20 3.1e-05 0.0028 19.0 0.9 2 23 457 479 456 479 0.96 15 20 0.00021 0.019 16.4 2.4 2 23 486 508 485 508 0.92 16 20 0.009 0.82 11.3 2.2 1 23 514 537 514 537 0.97 17 20 0.17 15 7.3 5.0 2 23 545 567 545 567 0.95 18 20 1.3e-05 0.0012 20.2 1.1 1 23 574 597 574 597 0.98 19 20 0.37 34 6.2 3.9 1 23 604 627 604 627 0.91 20 20 0.046 4.2 9.0 2.8 5 23 644 663 641 663 0.90
Sequence Information
- Coding Sequence
- ATGACCTCCTTGGAATTTGTTTGTGACTATTGCAGTCGGACTTTTACTAGAAAATACAATTTACAGAATCACATAGAAAATTGTCACATAAGATCTACTTGCTCATGTGAGATTTGTGGCCAGCGCTTCGGCAGCCCTGCAGGTTTGGAACTTCATTATACCAGAGGTCATAACAGCCTCTATCAACCGAATCCAGAATGTGAAATCTGTGGTCGTATATTCACtcgaaaacaaaacataatgtCTCACATGATCACGGTACATTTGCAAGGAGTTGGGCCTAAAATACAATGTAATATTTGCAACAAAGAATTTACTACCGAACGTAATCTCAAGAGGCACATGAGTCAATTGCACAATCCTGATATTGAGTATCCAACATGCAATGATTGCAATAAGACCTTTAGAGGAAAACAATCATTGATAGCGCATATCCAGGCCACCCATAGTCCTGACCGAGGATTGATCCAATGTCAactgtgcaataaagtatatacaaATAACAGGAATTTAAAGCGACATATTGAGATGTTCCATGGCGAAAAAGAAGAATTTAGATGTGATATTTGCCCTAAAGTGTACACTTCCAATCAGAGTCTGAGAAGACATTATAAGACTATGCATATCACAGATTGTCAAGATGAGTATCAATGCAATTACTGTTCAAAAATAATATATGGAAATGAGAATCTCAATACACATATTCAGTTCTACCACAAACAAGAGAGTGACAGTAATTCTACTGAACTAATTGACAGCTTTGGTACAGATCAAATTACAAGCTTTGATTTTGCATGCCACAAATGTGGAAGATGTTTTGAAGATGAACCATCACTGAGAAATCATGTTAAAACAGAACATTCATTCAAGACATTCTACAAATACTGTACGAAATCCCTAATGAATCAAATTACTTCAAAACAAGAGGTAAGTATGAATGAAAAGAAACCAGCCAGCATGATCTTTAATTgtgaattttgttttaatgCATTTTCTGGCATACCAGAGCTCAAAGAGCACATGAGGATGAACCATAATAAAGAATATTGTCTCTCAACATGCAATGTTTGCTTTACTAAGTTTTACAGCAAAGAGGCTATGTTTGAGCATAAGAAAATATGTATTGCTCCACCAGATGTAAATGCTTGCAGTCACTGTGACAAACTTTTTACTGATATATCAAGCCTTGAGTTTCATACGCGGATTTTTCATCCACAAGCGCAACTAGCGGACTCTAATATATCATCAACTAACGTTGATGACTCTCTAGATGAACATTTTAAATGTCCACATTGTGATAGGGTTTATTATAGCGATAGATCGCTAAAACATCACATTAAACTAAAACACACGACAGATGAGGCTATGGAGTGTGAAATTTGTGGTAAAATGTGCAGCAACAAATATTATTTAGCTTCTCACACAAAGATTGTTCATAACAACGATTCCTGGTCCAAATGTGATTATTGTGACAAGCAATTCAAGTCCAAAAGAAGTATTAGGCGGCACATCGAGTTTACTCACTTACCAATGCAAAGATACAAGTGTATTGAATGTGAGACATTGTTCAAAGAGAAGAGGAGTCTAAGAAAGCATGTCAGAACAAAGCATCCCAACTCAGCGAGGTTCCCTCAGTGTCATTTATGTAACAAAAGATTTGAGTCGGCTAAATCTTGCAAGATACATTTAAAACTAATACATTCCTTCAATATGAACACCTATCCTTGCCATTTGTGTTCAGTTTCATTCAGTTCCAACGAATCATTAACAATTCACATCCAAACTAAGCATTTGGCAGaagatgaaatatataaatgtgaAGAATGTAATTTAGTTTTCCAGGGTCAAGATAAATTCGACCATCACAATGAGAGTTGTCATGTGAATCTGGTTTCTAACATAAAACAGAAGGTCTTGCCTCGTTGTATTTTGTGTATGAAAGACTTTAGCACTAGGAAAACTCTCAAAcgtcatataaaaaaattccaCGATGGTTTTGACGTCGATGATCTAGCTACTTACGGATCACGTAAAAGAGTATTCAACATTGAATGTGATGACTGCATTAAAAACTTCAACAGTGATTATTATTTCAGCTTATATCAAAAGCTGAAACACTCGAGGGACTCAATAATATTTAAGTGTGAGTCATGTATGTGCTCCTATAATGTATTAGAATACTCTATCCAGAGATACAAAGCCACACACATGGAGACATGCAAAAGCACAATGATTTTGAGTGAACTGTGTACTGCAGAGATGAGTGATGAGGAGGCATCCTATTCAGGATTTGGATCGTTGCATGAAATGATGGAGCCAGTTAGCACGACTGTGGACATTAAATCGGAACCAGTTTTTGAGATTTCTGACAGTGAGATAAAGACTGAACCATTGTCTCCATAA
- Protein Sequence
- MTSLEFVCDYCSRTFTRKYNLQNHIENCHIRSTCSCEICGQRFGSPAGLELHYTRGHNSLYQPNPECEICGRIFTRKQNIMSHMITVHLQGVGPKIQCNICNKEFTTERNLKRHMSQLHNPDIEYPTCNDCNKTFRGKQSLIAHIQATHSPDRGLIQCQLCNKVYTNNRNLKRHIEMFHGEKEEFRCDICPKVYTSNQSLRRHYKTMHITDCQDEYQCNYCSKIIYGNENLNTHIQFYHKQESDSNSTELIDSFGTDQITSFDFACHKCGRCFEDEPSLRNHVKTEHSFKTFYKYCTKSLMNQITSKQEVSMNEKKPASMIFNCEFCFNAFSGIPELKEHMRMNHNKEYCLSTCNVCFTKFYSKEAMFEHKKICIAPPDVNACSHCDKLFTDISSLEFHTRIFHPQAQLADSNISSTNVDDSLDEHFKCPHCDRVYYSDRSLKHHIKLKHTTDEAMECEICGKMCSNKYYLASHTKIVHNNDSWSKCDYCDKQFKSKRSIRRHIEFTHLPMQRYKCIECETLFKEKRSLRKHVRTKHPNSARFPQCHLCNKRFESAKSCKIHLKLIHSFNMNTYPCHLCSVSFSSNESLTIHIQTKHLAEDEIYKCEECNLVFQGQDKFDHHNESCHVNLVSNIKQKVLPRCILCMKDFSTRKTLKRHIKKFHDGFDVDDLATYGSRKRVFNIECDDCIKNFNSDYYFSLYQKLKHSRDSIIFKCESCMCSYNVLEYSIQRYKATHMETCKSTMILSELCTAEMSDEEASYSGFGSLHEMMEPVSTTVDIKSEPVFEISDSEIKTEPLSP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -