Blac022670.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990055.1:17650122-17652668[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2e-05 0.0018 19.6 0.6 3 23 348 369 346 369 0.97 2 17 1.3e-05 0.0012 20.2 0.6 1 23 375 397 375 397 0.96 3 17 3.7e-06 0.00034 21.9 1.0 3 23 405 426 403 426 0.97 4 17 2.7e-06 0.00025 22.3 0.4 1 23 432 455 432 455 0.97 5 17 7.8e-05 0.0071 17.8 0.2 3 23 464 485 462 485 0.96 6 17 0.0012 0.11 14.0 2.5 1 23 491 513 491 513 0.95 7 17 0.0003 0.027 15.9 1.4 1 23 519 542 519 542 0.95 8 17 0.00017 0.015 16.7 1.7 1 23 548 571 548 571 0.96 9 17 0.042 3.8 9.2 0.2 3 23 579 600 577 600 0.95 10 17 6.6e-05 0.006 18.0 0.1 1 23 606 629 606 629 0.97 11 17 0.00011 0.0097 17.3 0.6 3 23 637 658 635 658 0.96 12 17 0.00045 0.041 15.4 0.1 1 23 664 687 664 687 0.97 13 17 4.5e-05 0.0041 18.5 0.7 1 23 693 716 693 716 0.96 14 17 0.00029 0.027 15.9 0.1 1 23 722 744 722 744 0.98 15 17 0.00018 0.017 16.6 0.9 3 23 752 773 750 773 0.94 16 17 1.2e-05 0.0011 20.3 0.9 1 23 779 801 779 801 0.97 17 17 7e-05 0.0064 17.9 3.5 3 23 809 830 807 830 0.98
Sequence Information
- Coding Sequence
- ATGCAGCAAACAGAGGAACTACGCGCGTGCCGAGCGTGTATGGCTACGAACTGCGAGTTGCACGAACTCGAGGAAAAAGGCCTTGCCGAGAAGTTTCAGCAAGTGACATCGTTAAGGCTTTGTACAATTAATAGCATGCCAAATCATATTTGCAGTTTCTGCCGCGCTCTGCTGATAAAGGCCTACCGGTTTCGCTTGAAATGTTTGGAGACCGATAAAATTATATCACAAAATGCTGTAGGACAGAATATACTTCTTGAAAAGAAAGCCTACTGGTGGCATGAATTGAGCCTATCGGAAAGGCCGGTCGTTTCATGTGGTGGAGTAAATGAATGTGTCAAGAATGAAGATGATGTAGCAATTAAAGAAGAACCAGCAGAGATAGAACATTTGCAACATGTTGATGGATATATCATGAGTGAACCAATCAAAGCTGTAGACATCAAATACAACGATAAAGTAATTTCAAATGATGAGAATTACGAATCAAGTCGTGGATGTCAGGGTGTAAACGAATTAGCCATGGCTGTCAAACCGACAGGTCTAATACAatcagaatataatattaaaaccgAGGGTTCATCTAACAATGAGCTTAAGGGAAATTTAATAAGATCCAACGACTCACATGAAGCATTTATTGAAGTTACAATCCATAGTACAGAAGCACATTCTTTGGAAAGAGTTGAAGAGGACGTCAATGCAATAGATATCCAAAACATAGAAGAGATAATCCACTATACAGAAGTAGATTTTTTGGATGAAGTTCAAGAAGATGTTAATGCAATCCATGACATCAATGAGTGTTTTTATGAAGAGACAGTCCACAATACAGAAGATCTTTTGAAAAAAGTTGAAGAAGATGTCAATGcaatagttattaaaaaaagtgcCATTAGCTGTAAACGCGAAGTATCAAGTAATTTTGAAGGGAATCCAATCGTTAGACAAAAATCCATAGCTACTATAAATGAGAGTGATATAACTAAAAGAAACTACTGTAAGAAAGAACCTGTGGATATAGGAGACCATCCCTTTGGTTGTGACATTTGTGGCAAGAAGTTTAAGACTCTAACCAATGTTCAGGCCCATTTTAGAACAGTACACAGCAAGGAGCAGCGTTATTCCTGCGAGCAGTGTGGCAAGGCATTCAAATTGCCATACTTGTTAAAGAGACACAAGGTGATGCATACAGGCGAACTTAGCTTCGGTTGTGACATCTGCGGCAAGATGTTCAAGAGAAAAGGCGATCTCCACATGCATATTAGGTATGTACACAGCGAGGCACGGCCTTATCCCTGCTCGCTGTGCGGCAAGGTCTTCAAATCAACTGGCTACTTAACGGATCACCAAAAACGTGCACATAATATGTACCGCGGTACCTTCGGTTGTGAAATCTGCGGCAAGATGTTCAAAACTGAGTCTAAAATCCAGGCCCATATTACAAGGGTACATAGCGAGGAACACTCTTATCTATGCGCGCAGTGCGGCAAAGCCTTCAGACTGCTGTGCCACTTAAAGGAACACCAACTGGTACATAGAGTCGACCGCCCCTTCAGTTGTGACATCTGCGGCAAAATGTTCAAGAGTAGGAACGGGGTCCAGATCCATAATAGGCATGAACATATGGAGGCGCAGGTGCATCCCTGCACACAGTGCGGCAAGGTCTTCAAATGGCGGAGCAAGTTAATGGTTCACCAAAAACGGGTACATACAGTTGAACGACCCTTCGGTTGTGACATCTGCAGCGCGATGTTCCAGAGTAGGGACGAGGTCCAGACCCATATGACTCAGCTACACAGCGAGGCGTGGCCATATCCCTGCGTGGAGTGCGGCAAGCTCTTCAAAATGCCGGACACTTTACTGGCTCACCAAAAACGGATGCATACGGGAGAACGTCTCTTCGGTTGTAACATCTGCGGTAAAATGTTCAAGAGCAACAGAGAGGTCCAGCTCCATACTAGGCAGGTCCACAGCGAGGCGCGGCCTTATCCCTGCGCGCAGTGCGGTAAGGCCTTCAAATTGCCGAACGTCTTAATGGATCACCAAAAACGGGTGCATAAAGGCGAACGGCTATTCTGTTGTGACATCTGCGGTAAGATGTTTAAAGCTAAGGGCGATGTCAAGGTCCATATTAGGCAGATACACAGCGAGGCACGGCCTTATCCCTGCGAGCAGTGCGGCAAGGCCTTCAAAATGGCGTACATCTTAAAGGGGCACCAACGGGTGCATACAGAAGAGCGTCCCTTCGGTTGTGACATCTGCGGCAAGATGTTCAAGACTAAGAGAACTATGCTGAAACATACTTTGCAGATACACAGTGAGGAGCGGCCTTATCCCTGCGCGCTGTGCGGCAAGGCCTTCAAATCGTCGTGCATGTTAAGGAGACACCAAGTGGTGCATACGGGCGAACGCCCCTTCGGATGTGACGACTGCGGCAAAACGTACAAGACAAAGTGCGATATGCGAACACACATCAAGACCTTTCACATGAACAAACTTAGGACTAAacggattaaaaaaaaaaatagggtcAATAATGATTAA
- Protein Sequence
- MQQTEELRACRACMATNCELHELEEKGLAEKFQQVTSLRLCTINSMPNHICSFCRALLIKAYRFRLKCLETDKIISQNAVGQNILLEKKAYWWHELSLSERPVVSCGGVNECVKNEDDVAIKEEPAEIEHLQHVDGYIMSEPIKAVDIKYNDKVISNDENYESSRGCQGVNELAMAVKPTGLIQSEYNIKTEGSSNNELKGNLIRSNDSHEAFIEVTIHSTEAHSLERVEEDVNAIDIQNIEEIIHYTEVDFLDEVQEDVNAIHDINECFYEETVHNTEDLLKKVEEDVNAIVIKKSAISCKREVSSNFEGNPIVRQKSIATINESDITKRNYCKKEPVDIGDHPFGCDICGKKFKTLTNVQAHFRTVHSKEQRYSCEQCGKAFKLPYLLKRHKVMHTGELSFGCDICGKMFKRKGDLHMHIRYVHSEARPYPCSLCGKVFKSTGYLTDHQKRAHNMYRGTFGCEICGKMFKTESKIQAHITRVHSEEHSYLCAQCGKAFRLLCHLKEHQLVHRVDRPFSCDICGKMFKSRNGVQIHNRHEHMEAQVHPCTQCGKVFKWRSKLMVHQKRVHTVERPFGCDICSAMFQSRDEVQTHMTQLHSEAWPYPCVECGKLFKMPDTLLAHQKRMHTGERLFGCNICGKMFKSNREVQLHTRQVHSEARPYPCAQCGKAFKLPNVLMDHQKRVHKGERLFCCDICGKMFKAKGDVKVHIRQIHSEARPYPCEQCGKAFKMAYILKGHQRVHTEERPFGCDICGKMFKTKRTMLKHTLQIHSEERPYPCALCGKAFKSSCMLRRHQVVHTGERPFGCDDCGKTYKTKCDMRTHIKTFHMNKLRTKRIKKKNRVNND*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -