Blac019815.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990052.1:18786014-18787372[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3e-07 2.1e-05 25.8 2.5 1 23 66 89 66 89 0.98 2 13 7.9e-07 7.2e-05 24.0 0.6 1 23 100 123 100 123 0.96 3 13 1.2e-05 0.0011 20.4 0.6 1 23 129 152 129 152 0.97 4 13 7.5e-06 0.00068 21.0 0.6 1 23 158 181 158 181 0.96 5 13 3.3e-05 0.003 19.0 0.7 1 23 187 210 187 210 0.95 6 13 2.8e-08 2.5e-06 28.6 3.3 1 23 220 242 220 242 0.99 7 13 4e-07 3.6e-05 25.0 1.4 1 23 248 271 248 271 0.97 8 13 0.00015 0.014 16.9 0.6 1 23 277 300 277 300 0.97 9 13 8.2e-05 0.0075 17.7 1.2 1 23 306 329 306 329 0.95 10 13 1.7e-06 0.00016 23.0 0.2 3 23 337 358 335 358 0.97 11 13 3.9e-06 0.00035 21.9 0.4 1 23 364 387 364 387 0.96 12 13 8.2e-06 0.00074 20.9 0.2 1 23 397 419 397 419 0.99 13 13 5e-07 4.6e-05 24.7 0.6 1 23 425 448 425 448 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAAGTTGAAAGTGTTGATGCAAATGACATCAAAATTCCCATCAGCAGTGAAGGCAAAGTATCAGATTTTAAAAGGAATATGATGAAAAGCCTTAAATCTGTAGCTACTATGAATGAGAGTGATATAACTAAAAGAAACTGTTATAAGAAAGCTGTCCCTATTGCTCAAGAACACAGCGAGGAGCGGCCATATCCCTGTGAACAGTGTGGCAAGGCCTACACAACACGGTATAACTTGAATAAACATCATAGAAGGGTACATCAAAATAAAGTGCATAAAGGCGTACGTTCCTTCAGTTGTGACATCTGTGGCAAGGTGTTCAAGACTAAATATAATATCCAGCTCCATATTACAAGGGTACACACCGAGGCGCGGCCGTATTCCTGTGAGCAGTGTGGACTGGCCTTTAAAACACAGCAATACTTAAAGGGTCACCAAAATCGTGTTCATCTAAGTGGACGTCCCTTCAGTTGTGACATCTGCAGCAAGATGTTCAAGACTAAgtctgatatccaggtgcatcTTAAATTGGTACACAGCAAGGCGCGGCCATATCCCTGCGAGCAGTGCGGCATGGCCTACAAAACGTCATGGAACTTAAAATATCACCAACAATTTACACATATGCCGGTAGATAGCAATGCACAATGTTATACCTGCGAGCAATGCGGCAAAACCTTCAAAAGGCAGAGTAACTATAGGAATCATCAACAGATGCATAAAGGGGGACGTCCCTTTAGTTGTGATATCTGTGGCAAAATGTTTAGGACTAAGCACAATATCCAGGTCCATATTAAAATGGTACACAGTGAGGTGCGACCTTATCCCTGCACACAGTGCAGCAAGGTCTTCAAGGCGAAGTATAATATCCAGCTGCATATTTCAAGGGTACACACCGACGCGCGGCTGCATCCCTGCGAGCAGTGCGGCATTGATTTTAAAACACAGCTATATTTAAAGCGTCATCAAGACCGGGTGCATCTAAGCGGACGTCCCTTCGGTTGTGACATCTGCGGTAAGATGTTCAAGACAAAGTCTGATATCCAGGTCCACATTAAAATGGTACACAGTGAGGTTCGGCCGTATCCTTGTGAGCAGTGCGGCATGGCCTTCAAAACGTCATGGAACTTAAAATATCACCAACAATGGACACATATGGTCTTAGATACCAATGCGCGATCTTATACCTGTGCACAGTGTGGCAAGGCCTTCAAATCGCCAGGCATATTAAAGAGTCACCAACGGGTGCATACAGACAAATATCTCTTCACTTGTGATATTTGCGGCAAGGAGTACCGGTATAAGGCTGGTCTCCGGAAGCACATCATGACTACCCATAGAAATGTGCCTTGA
- Protein Sequence
- MEKVESVDANDIKIPISSEGKVSDFKRNMMKSLKSVATMNESDITKRNCYKKAVPIAQEHSEERPYPCEQCGKAYTTRYNLNKHHRRVHQNKVHKGVRSFSCDICGKVFKTKYNIQLHITRVHTEARPYSCEQCGLAFKTQQYLKGHQNRVHLSGRPFSCDICSKMFKTKSDIQVHLKLVHSKARPYPCEQCGMAYKTSWNLKYHQQFTHMPVDSNAQCYTCEQCGKTFKRQSNYRNHQQMHKGGRPFSCDICGKMFRTKHNIQVHIKMVHSEVRPYPCTQCSKVFKAKYNIQLHISRVHTDARLHPCEQCGIDFKTQLYLKRHQDRVHLSGRPFGCDICGKMFKTKSDIQVHIKMVHSEVRPYPCEQCGMAFKTSWNLKYHQQWTHMVLDTNARSYTCAQCGKAFKSPGILKSHQRVHTDKYLFTCDICGKEYRYKAGLRKHIMTTHRNVP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -