Blac006192.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990042.1:10656845-10675805[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.9e-08 5.4e-06 27.6 1.2 1 23 101 124 101 124 0.97 2 16 5.2e-07 4.8e-05 24.6 0.1 1 23 129 152 129 152 0.97 3 16 0.00014 0.012 17.0 0.7 1 23 158 181 158 181 0.97 4 16 0.00015 0.013 16.9 0.0 1 23 187 209 187 209 0.98 5 16 3.6e-05 0.0033 18.8 0.3 3 23 217 238 215 238 0.96 6 16 7.2e-05 0.0065 17.9 0.1 3 23 246 266 245 266 0.95 7 16 2.6e-05 0.0023 19.3 1.3 1 23 272 295 272 295 0.96 8 16 5.7e-05 0.0052 18.2 1.1 1 23 301 323 301 323 0.97 9 16 0.00013 0.012 17.0 1.1 1 23 329 352 329 352 0.97 10 16 1.8e-05 0.0017 19.7 0.1 1 23 358 380 358 380 0.98 11 16 3.1e-05 0.0028 19.0 0.9 1 23 386 409 386 409 0.96 12 16 0.0041 0.37 12.4 0.9 1 23 415 437 415 437 0.97 13 16 1.7e-06 0.00015 23.0 0.2 1 23 446 468 446 468 0.98 14 16 0.00012 0.011 17.2 0.2 1 23 479 504 479 504 0.97 15 16 0.00024 0.022 16.2 0.1 3 23 512 533 510 533 0.93 16 16 0.0032 0.29 12.7 0.9 1 22 539 560 539 560 0.96
Sequence Information
- Coding Sequence
- ATGATGCATGGACTGAGCGTAACAGACATAATGGTTGTTGCTTTTGGTGGAGAAAATGAATATGCCAATTATATTGATCAACTAGATTCTCGTGAAGCAGTTGTTATGAAACATCACGTGGCAGTTAAAAAAGAACCTGCCGAGATAGATCATTTCCAAAAGGTTGATGGCTACTTCGTAGATGAAACTGTCATAGGTGATAATCAAGTACTTTCAAATGATGAGAGTCATATACCAAATACAGCAAATGAATTAGCCATGGATATTTATCCGAAAACGGTGTGTACAGGCGAACGTGCCTTCAATTGTGACATCTGCGGCAAGACATTCAAGACTAAGTCAAATATCCAGAGCCATATTAGAAAGGTACACAGCGTGGCGCGGTATCCCTGCGAAGAGTGCGGCAAGGTCTTCAAAATGCCGGGATCATTAAAGGATCACCAAAAACGGGTGCATACAGGCGAACGTCCCTTCACTTGCGACATCTGCGGCAATATATTCAAGACTAAGAGAGAAATGCTGTACCATATTAGGCAGCTACACAGCAAGGCGCGGCCTTATCCCTGCGTGCAGTGCGGCATGGCCTTCAAATTGCCGGGCACCTTAAAACAACACCTACTGGTGCATTCAGACGAACGTCCCTTCGGTTGTGACATCTGCGGTAAGACGTTCAAGAGAAGGATCGATATCCAGGCCCACACTAGGCTGGTACACAGCGAGACGCGGCCTAATCCCTGCGCACTGTGTTACAAGGTCTTCAAATCGCCGGACTTGTTAAAGAAGCACCAAGTGGTGCATTCAGGCGGACGTCCCTTCGTATGTGACATCTGCGGAAAGACGTGCAAGAGAAAGAACGAAATCCAGACCCATATTATGCTACTACACAGCGAGGCGCGGCCTTATCCCTGCGCGCAGTGCGGCAAGGCCTTCAAATTGCTGACCCACTTAAAGAATCACAAACTGGTGCATACAGGCGAACGGCGTTTCAGTTGTGACATCTGCGGCAAGAAGATATCGACTAAGAGACATATGGCGGGGCATATGAGGCAAGTACACAGCGAGGCGCGGCCATACCCCTGCGCGCAGTGCGGCAAGGCCTTCAAAATGCCGAACAAGTTAAAGGATCATCAACTGGTGCATACAGGCGGACGTCCCTTCAGCTGTGACGTCTGCGGCAAGAGCTTCAAGAGAAAACACGCAATCGGGGGGCATATGAGGCAAGCACACAGCGACGCGCGGCCATATCCCTGCGCGCAGTGCGGCAAAGCCTTCAAATTGGCGAACAAGTTAAAATGTCACCAATTGGTCCATATTAGACACATCGAGGCGCGGCCATATCGCTGCGCGCAGTGCGGCAAGGCCTTCAGATTGCCGGACTTGTTAAAGAAACACCAACTGGTCCATACTAGGCTGGTACTCAGCAAGAAGCGGCCTTATGCCTGCAAGCAGTGTGGGCCTTCGAAGGCCTTCAAATCACCGAGCGCGTTGAAGTATCACCAACAGATGGTGCATGCCAGCGAACGTCCCTTCGGTTGTGACATCTGCGGCAAGATGTTCAAGAGAAAGCCTGATGTCCAGATCCATGCGATGCTGCTACACAGCGAGGCGCGGCCTTATCCCTGCGCGCAGTGCGGGAAGGCCTTCAAATTGCAGGGCAAGTTAAACTGTCACCAACGTACGGTACGTATATACGCACAGTGCGACTATGATCATACGTACGGAGAGAAGGAGGGTAGGAGGGAAATATAG
- Protein Sequence
- MMHGLSVTDIMVVAFGGENEYANYIDQLDSREAVVMKHHVAVKKEPAEIDHFQKVDGYFVDETVIGDNQVLSNDESHIPNTANELAMDIYPKTVCTGERAFNCDICGKTFKTKSNIQSHIRKVHSVARYPCEECGKVFKMPGSLKDHQKRVHTGERPFTCDICGNIFKTKREMLYHIRQLHSKARPYPCVQCGMAFKLPGTLKQHLLVHSDERPFGCDICGKTFKRRIDIQAHTRLVHSETRPNPCALCYKVFKSPDLLKKHQVVHSGGRPFVCDICGKTCKRKNEIQTHIMLLHSEARPYPCAQCGKAFKLLTHLKNHKLVHTGERRFSCDICGKKISTKRHMAGHMRQVHSEARPYPCAQCGKAFKMPNKLKDHQLVHTGGRPFSCDVCGKSFKRKHAIGGHMRQAHSDARPYPCAQCGKAFKLANKLKCHQLVHIRHIEARPYRCAQCGKAFRLPDLLKKHQLVHTRLVLSKKRPYACKQCGPSKAFKSPSALKYHQQMVHASERPFGCDICGKMFKRKPDVQIHAMLLHSEARPYPCAQCGKAFKLQGKLNCHQRTVRIYAQCDYDHTYGEKEGRREI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -