Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990066.1:6098731-6105794[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0015 0.13 13.7 0.3 2 23 32 54 31 54 0.96

2 27 1.6 1.5e+02 4.2 0.8 3 23 79 99 77 99 0.94

3 27 3.4e-05 0.0031 18.9 0.5 1 23 103 125 103 125 0.98

4 27 0.0019 0.18 13.4 1.9 1 23 130 153 130 153 0.97

5 27 0.0013 0.12 13.9 0.6 2 23 163 185 163 185 0.94

6 27 3.2e-05 0.0029 19.0 0.3 1 23 192 215 192 215 0.97

7 27 0.00061 0.056 14.9 1.4 1 23 221 243 221 243 0.98

8 27 0.03 2.7 9.6 0.4 2 23 256 278 255 278 0.96

9 27 0.041 3.8 9.2 0.5 2 23 305 327 304 327 0.93

10 27 0.013 1.2 10.8 0.3 3 23 352 372 350 372 0.96

11 27 0.0022 0.2 13.2 0.1 1 23 376 398 376 398 0.98

12 27 0.15 13 7.5 0.4 1 23 403 426 403 426 0.95

13 27 0.088 8.1 8.2 1.6 2 23 436 458 436 458 0.83

14 27 0.0012 0.11 14.0 0.7 1 23 465 488 465 488 0.98

15 27 7.5e-06 0.00069 21.0 1.4 1 23 494 516 494 516 0.99

16 27 1.3e-07 1.2e-05 26.5 1.9 1 23 522 544 522 544 0.98

17 27 8e-05 0.0073 17.7 0.4 1 23 550 573 550 573 0.97

18 27 0.1 9.3 8.0 0.9 2 23 585 607 584 607 0.96

19 27 0.022 2 10.1 0.1 2 23 634 656 633 656 0.95

20 27 1.3 1.2e+02 4.5 1.3 2 23 681 702 680 702 0.96

21 27 0.00076 0.069 14.7 0.6 1 23 706 728 706 728 0.98

22 27 0.0002 0.018 16.5 0.4 1 20 733 752 733 753 0.95

23 27 0.00057 0.052 15.0 0.5 2 23 765 787 765 787 0.93

24 27 8.2e-06 0.00075 20.8 0.4 1 23 794 817 794 817 0.98

25 27 0.00047 0.043 15.3 2.1 1 23 823 845 823 845 0.97

26 27 1.8e-06 0.00017 22.9 1.7 1 23 851 873 851 873 0.99

27 27 0.00028 0.025 16.0 3.7 1 23 879 902 879 902 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0015	0.13	13.7	0.3	2	23	32	54	31	54	0.96
2	27	1.6	1.5e+02	4.2	0.8	3	23	79	99	77	99	0.94
3	27	3.4e-05	0.0031	18.9	0.5	1	23	103	125	103	125	0.98
4	27	0.0019	0.18	13.4	1.9	1	23	130	153	130	153	0.97
5	27	0.0013	0.12	13.9	0.6	2	23	163	185	163	185	0.94
6	27	3.2e-05	0.0029	19.0	0.3	1	23	192	215	192	215	0.97
7	27	0.00061	0.056	14.9	1.4	1	23	221	243	221	243	0.98
8	27	0.03	2.7	9.6	0.4	2	23	256	278	255	278	0.96
9	27	0.041	3.8	9.2	0.5	2	23	305	327	304	327	0.93
10	27	0.013	1.2	10.8	0.3	3	23	352	372	350	372	0.96
11	27	0.0022	0.2	13.2	0.1	1	23	376	398	376	398	0.98
12	27	0.15	13	7.5	0.4	1	23	403	426	403	426	0.95
13	27	0.088	8.1	8.2	1.6	2	23	436	458	436	458	0.83
14	27	0.0012	0.11	14.0	0.7	1	23	465	488	465	488	0.98
15	27	7.5e-06	0.00069	21.0	1.4	1	23	494	516	494	516	0.99
16	27	1.3e-07	1.2e-05	26.5	1.9	1	23	522	544	522	544	0.98
17	27	8e-05	0.0073	17.7	0.4	1	23	550	573	550	573	0.97
18	27	0.1	9.3	8.0	0.9	2	23	585	607	584	607	0.96
19	27	0.022	2	10.1	0.1	2	23	634	656	633	656	0.95
20	27	1.3	1.2e+02	4.5	1.3	2	23	681	702	680	702	0.96
21	27	0.00076	0.069	14.7	0.6	1	23	706	728	706	728	0.98
22	27	0.0002	0.018	16.5	0.4	1	20	733	752	733	753	0.95
23	27	0.00057	0.052	15.0	0.5	2	23	765	787	765	787	0.93
24	27	8.2e-06	0.00075	20.8	0.4	1	23	794	817	794	817	0.98
25	27	0.00047	0.043	15.3	2.1	1	23	823	845	823	845	0.97
26	27	1.8e-06	0.00017	22.9	1.7	1	23	851	873	851	873	0.99
27	27	0.00028	0.025	16.0	3.7	1	23	879	902	879	902	0.97

Sequence Information

Coding Sequence: ATGCAGTCGATACACAGCACCGACGAGTATCGTGGAATGGATGCAGTCAAACATCGCAATAACAGCAGTTGCAAAATAGACACAACAGACCTAAAATGCAACTTGTGCGAGCAAAAGTTTGCCCTATTATCGAGTTTGAAGGAACACCTAATAACGGAGCATGATGTGGAATTCACCCCCGAAgagaaaaattacattatcgAGTTCAAGCTGAGCGACGGTGAGGTAATGAACTGTGCTCTATGCAGCGCCACTTTCGAGGCGTTTAAGACGTTATTGCAACATATGCACGGACACTACAGGAATTTTATATGCAAGGAATGCGATACTGGTTTCATAAACGAGCGCAAGTTGATGGCACATCAGAAAACCCACGAGACGGGCACCTTTAAATGCTCGTTCTGCCCGAAAGTGTTCACAACTTCTGTGAGGCGCACGAGTCACGAGAAGACAGTTCATAAGAATGTTGCTCGAGAACGAAGCAGGAAGTGTCCCTTCTGTGATAAGACATTCACGAGCTACTATGTCAGGAATAGACACATATTGGAGGGCCATAACTCCACAGCAACGAGTTACAAATGCAATATATGCGACAGAGTATACCCAATGAAGTCGCGGCTCTCAAATCATATAAGAGAAGTACATCTATTGGAGAAAGAACACAAATGTCCTATGTGTGGGGACGCTTTCTTCTCTAAATACGCAATGAATCAGCATATGCTCCGACATACAGGCAAGAAGACCCACAAATGCACTGAGTGCATCCAATGCTGTTACTGCGAAGCGAACTTCTCTAACTTGGCACCTTGGAGGGAGCATATGCAGTCGGAACACAGCAACGACGAGTATCGTGcgattaaattatttaagaaacacGCCCACATCGCATTCAAAATGGACACAACAGACCTAAAATGCAACTTCTGCGAGCAGAACTTTGAAATATTATCGAGTTTAAAAGAACACCTAACTAACGAGCATGACGTGAAATTCATCCCCGAAGAGAAAAATTATGTTATCGAGTTCAAGCTGAGCGACGGCGATGTTATGAACTGTGCTCTATGCAGCGCCTCTTTCGAGTCGTTCAAGACGTTGTTGCAACATATGAACATTCACTACAGGAATTTTATATGCGAGGAATGCGATGCTGGTTTCATAAACGAAGGCAAGTGGTTGACGCATCAGAAAACCCACGTGAAGGGCACTTTCGCATGCTCGTTCTGTTCCAAAGTGTTCCTAACTGCTGTGCGTCTAAATAGTCACGAGAAAAGTATTCATATGCATGCTGCTCGAGTACGAACTAGGAAGTGTCCGCTCTGCGAGAAGACATTCACCACCTACCATATCAGGAATAGACACTTATTGGATGACCACAACTCCACCGCTGCCACCTACAAGTGCAATATATGCGATCAAGTGTTCCTATTGAAAATGTATCTCTCTAATCATATTAGAAAAGTTCACTTAATGGAGAGGAGCTACAAATGTTCTGAGTGTGGAATGGATTTCTTCACAAAAAGGGGATTGCAGAAGCATATGATCAAACACAATGGCGAGAGGATCCACAAATGCACAGAGTGCGGCAAAGCTTATGCTCGAAAGGATACCCTGAGGCAACATATGAGGATCCATAATAACGACCAAAGGTATAAGTGTGAACTGTGTGGTTCGGCGTTCGTCCAAAAGGGCAGTATGAAGAGTCATATGTTGTCCTACCATGGTGTAGTTTTAGAGGAATTTGAACAAGGCATCCAATGCTGTTACTGCCAAGCGAACTTCCTCAACTTAGAACTTTTGAGAGAGCATATGCAGTCGATACACAGCACCGACGAGTATTGTGGAATGGACGCAGTCAACCATCGCAACAACACCAGTTGCAAAATAGACATAACTGACCTAATATGTACCTTGTGCGAGGAGAACTTCGATCTACTATCGAGTTTGAAGGAACATCTAATAATGGAGCATGATGTGGAATTCATGCCcgaagaaaaaaattacattatcgaGTTCAAGCTGAGCGAAGAAGGTGAGGTTATGACCTGCGCTCTATGCAGCTACTCATGCGAGGCGTTCAAGACTTTATTGATACATATGAATAATCACTGTCGGAATTTTATATGCGAGGAATGCGATGCTGGGTTCGTAAACGAGCACAGGTTGATGATGCATCAGAAAACCCACAGGACTGGCACTTTTCAATGCTCGTTCTGTCCTAAAGTGTTCTCAACATCTGTGAGGCTGGAGCGCCACGAGAACTGCTCTCATAAGAACCCGAGCTTAAATCAACGCAGATGTCCCCTCTGTGAGAAGACATTCACGAACTACTATGCCAGGAATAGACACATATTGGACGACCACAACTCCTCTGCTACCAGCTACAAGTGCAGTATATGTGATAAAATATTCGTATTGAAGATGGATCTCTCGAATCATATAAGAAAAGTTCATTTAATGGAGAGGAATCACAAATGTTCCGAGTGTGGAATGGGTTTCTTTACAAGAAGGGCAGTGAAGAGGCATATGGTCCGGCATAATGGCGAGAGGATCTACAAATGTACAGTGTGCAAGAAAGCTTACGCCCGAAAGTTCACCCTCAGAGAACATATGAGAATACACAACAACGACAGGCGGTTTAAGTGTGAACTGTGTGGTTTCACGTTCGTCCAAAAATGCAGTATGAAGAGTCACATGTTGTCGACTCATGGTGTAGTTTTCGCGGAATTTGAACAAGCGAAGCTGAATGCAACGGCCTAG
Protein Sequence: MQSIHSTDEYRGMDAVKHRNNSSCKIDTTDLKCNLCEQKFALLSSLKEHLITEHDVEFTPEEKNYIIEFKLSDGEVMNCALCSATFEAFKTLLQHMHGHYRNFICKECDTGFINERKLMAHQKTHETGTFKCSFCPKVFTTSVRRTSHEKTVHKNVARERSRKCPFCDKTFTSYYVRNRHILEGHNSTATSYKCNICDRVYPMKSRLSNHIREVHLLEKEHKCPMCGDAFFSKYAMNQHMLRHTGKKTHKCTECIQCCYCEANFSNLAPWREHMQSEHSNDEYRAIKLFKKHAHIAFKMDTTDLKCNFCEQNFEILSSLKEHLTNEHDVKFIPEEKNYVIEFKLSDGDVMNCALCSASFESFKTLLQHMNIHYRNFICEECDAGFINEGKWLTHQKTHVKGTFACSFCSKVFLTAVRLNSHEKSIHMHAARVRTRKCPLCEKTFTTYHIRNRHLLDDHNSTAATYKCNICDQVFLLKMYLSNHIRKVHLMERSYKCSECGMDFFTKRGLQKHMIKHNGERIHKCTECGKAYARKDTLRQHMRIHNNDQRYKCELCGSAFVQKGSMKSHMLSYHGVVLEEFEQGIQCCYCQANFLNLELLREHMQSIHSTDEYCGMDAVNHRNNTSCKIDITDLICTLCEENFDLLSSLKEHLIMEHDVEFMPEEKNYIIEFKLSEEGEVMTCALCSYSCEAFKTLLIHMNNHCRNFICEECDAGFVNEHRLMMHQKTHRTGTFQCSFCPKVFSTSVRLERHENCSHKNPSLNQRRCPLCEKTFTNYYARNRHILDDHNSSATSYKCSICDKIFVLKMDLSNHIRKVHLMERNHKCSECGMGFFTRRAVKRHMVRHNGERIYKCTVCKKAYARKFTLREHMRIHNNDRRFKCELCGFTFVQKCSMKSHMLSTHGVVFAEFEQAKLNATA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -