Blac028049.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- ZFAT
- Assembly
- GCA_905147135.1
- Location
- LR990061.1:4926334-4929195[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00016 0.014 16.8 0.6 3 23 348 369 346 369 0.96 2 20 2.8e-08 2.6e-06 28.6 1.5 1 23 375 397 375 397 0.98 3 20 3.9e-05 0.0035 18.7 2.2 1 23 403 426 403 426 0.96 4 20 2.8e-05 0.0025 19.2 0.7 1 23 430 452 430 452 0.97 5 20 4.2e-06 0.00038 21.8 0.3 1 23 458 481 458 481 0.98 6 20 9.3e-06 0.00085 20.7 0.3 1 23 487 509 487 509 0.97 7 20 0.00045 0.041 15.4 0.5 3 23 517 538 515 538 0.92 8 20 0.00023 0.021 16.3 0.2 3 23 545 565 543 565 0.97 9 20 2e-06 0.00018 22.8 2.6 1 23 571 593 571 593 0.97 10 20 5.2e-06 0.00047 21.5 0.3 1 23 599 622 599 622 0.98 11 20 0.0011 0.1 14.1 1.5 1 23 628 650 628 650 0.97 12 20 0.00018 0.017 16.6 0.6 3 23 658 679 656 679 0.96 13 20 7.9e-06 0.00072 20.9 0.2 1 23 684 706 684 706 0.97 14 20 6.3e-05 0.0058 18.1 1.4 3 23 714 735 712 735 0.95 15 20 3e-06 0.00027 22.2 0.2 1 23 747 769 747 769 0.98 16 20 7.5e-06 0.00068 21.0 1.2 1 23 775 798 775 798 0.96 17 20 1.8e-05 0.0016 19.8 0.5 1 23 804 826 804 826 0.98 18 20 6e-05 0.0055 18.1 3.5 1 23 832 855 832 855 0.96 19 20 0.00017 0.016 16.7 0.6 1 23 861 883 861 883 0.96 20 20 4.6e-05 0.0042 18.5 2.5 1 23 889 912 889 912 0.98
Sequence Information
- Coding Sequence
- ATGCAGCGAACAGAGGGACTACGCGCGTGCCGGGCATGCTTGACTACAGAGTGCGAGTTACACGAGCTAAAGGAAAATGGACTGTTCGAGAAGTTTCAGCAAGTGACATCGTTGCGGCTTTGTCCAATTGATGGTAtgccaaatcaaatcaaatctatCAATCAAAATCAACTGCCGAAGCACATTTGCAGTTTTTGCCGTGCTCTGCTGATAAAGGCCTACGACTTTCGTGTTAAATGTTTAGagactaataaaattatattacaaaagGTTGGGAGCCTAAACGATATCCACCATGTGAAGCAAGTCAGTACACTGCATGAACTGAGTCTAACAGACATTTTGGTTGTTGCATTCGATGGAGAAACTGAATGTACCAAGAATATTGATCAACTAGATTGTCATGAAGTAGTTATGGAACGTAATATAGTACCTACAGAACATGTCAAGATAGATAATTCGCAAAATGTTGATAAGTATTTTGTAGATGATCCTGTCCAATACAACAATCACATAGATTCAAATGATCAGAGTCACAATTCGAATACATCAAATCATGCGCACCGTGATGCGAACGAATTAGGCAATACTATTGATCTGACAACGGAAATACAAACAGAATGTAATATTAAAGATgaattatttgaaattttacCCAAAAAAGTCCAATGCAACGATCAAGTAGATTCAAATTATCAGAGTCACAATTCAAATCAGGCTCACCATGATGCGAACGAATTAGGCATGGCTATTGATCTGACAATGACAATACAAACAGAATGTAATATTAAAGATGAATTATTTGAAATTTCACCCAAAAAAGAGTTTTATGAAAGTTTCGGTTCAGACTCGCATGAAGCATTTAGTGAAGAGATAATTCATAATACACAAGTAAATAGTTTGAAAAATGTTGAAGAAGACGTCAACACATACAATACTGAAAGTGCCAGTAACAGTAAACAAAGCATACCAACTATTTCAAAAGGGGACACAAAATCACTAAAAATTGTAGCTAATATAGATGAAAGTAATTCCTTTGGTTGTGACATCTGCAACAAAATGTTTAAGACTAAGTTCTCTGTCCAGGCCCATATTACAAGGGTACACAGTGGGATGAGGCTGTATCCCTGTGAGCACTGCGGCAAGACCTTCACACGTGCAGGCAACTTAAAGATTCACCAACAGAGGCATATGAGCAAGTGTGTCTTCTGTTGTGATATTTGTGGCAAGATGTTCAAGTTGAAGACAGATGTCCAGAAGCATATCAGACAGGTACATAATGAGGAATATCCCTGTGAGCAGTGCGGAAAGACCTTCAAACGCTCAAGCATCTTACTTAAACATAAACTGGTTCATACGGCCAAACGGAACTACACTTGTGACATCTGTGGAAAGATGTTTAAATCTAAGTGGTCTATCCAGGTCCATATTACAACGGTACATAGTGAGGAGCGGACTTATCCCTGTGTGCAGTGTGGCAAGACCTTTAAATTGCCAAGCGACTTAAAGAGTCACAAACTGGTGCATACAGGCGAATGTGCCTTTGGTTGTGACATTTGCGGCAAGATGTTTAAGACTAAGTACTCTATCCAGGTCCATAATACAAGGGCACACAGTGAGCGTGCCTTCGGTTGTGATATTTGCGGCAAGATGTTCAAGTTCAAGGCAGATGTCCAAGTGCATAAACAGGTACACAATGAGGTGCGGCCTTATCCCTGTGAGCAGTGCGGAAAGACCTTCAAACGCTCAAGCACCTTATCACATCATAAACTGGTTCATACAGGAAACCGGAACTACACTTGTGACATCTGTGGAAAGATGTTTACATCTAAGTGGTATATCCAGGTCCACATTACAACGGTACATAATGAGGCGCGGTCTTACTCCTGTGCACAGTGCGGCAAGACCTTTAAATGGCAACGCTCCTTATATAAGCACAAACTGGTTCATACAGGTGAACATTCATTTGGTTGTGACATCTGTGGCAAGACGTTCAAGATTAAGACAGATGTTCAGAAGCATACTAGACAGGTACATAGCGAGCATCCTTATCCCTGCGCGCAGTGCGACAAGGAGTTCAAATCGCCAGCCAAATTAAGGCGTCACCAATTGGCTCATACAGACAAACGTCCCTTCGGTTGTGACATCTGTGGCAAGATGTTCAAGAGAAAGTCCGAGGTTCGTGTCCATTCTAGGCACGTACATAAGGAGGCACATCAAGATTCCAAGGCGAGGTTGTATCCCTGCGACCAGTGTGACAAGGTTTTCGATTTGCCAAGCAAGTTAAAAATTCACCAACGAGTGCATACAAGTGAATGTCCCTTCAGTTGTGACATCTGCGGCAAGAGGTTCAAAACTAAGTCATATGCTAAAATTCATACTAGACTGGTACATAGCGAGGCGCGGCCTTATCCCTGCGCTCAGTGTGGCAAGGCCTTCAAACTGTCCCGAACCTTAAAGGAGCACCAACGTCTACATAAAGACGAACGTCCGTTCAGTTGTGACATCTGCGGCAAGAAGTGCAAGACTAAGTCAGATGTCCAGAAGCATACTAAGCAGGTACACAACGAGGCGCGGCCTTTTGCCTGTGTGCAGTGTGGCAAAGCCTACAAATTTAGAAGCAAGTTAAAGATTCATCAAATCCTGCACAAAAGCGCGCGTCCCTTCAGCTGTGACGTCTGCGGCAAAACGTTCAAGATAAGGTACCACATCCAGCAACACATACAGACTACCCACATGAAGAAACTTACAACTAAGCGGAAtaagattaaaaaatatagtgtaCAGAATGATAAATTATCTCGAGTAAATAAAGCCAGCCGAGTAGACAAGGATCTTAATGAACATGAGGGACAGAGCTAA
- Protein Sequence
- MQRTEGLRACRACLTTECELHELKENGLFEKFQQVTSLRLCPIDGMPNQIKSINQNQLPKHICSFCRALLIKAYDFRVKCLETNKIILQKVGSLNDIHHVKQVSTLHELSLTDILVVAFDGETECTKNIDQLDCHEVVMERNIVPTEHVKIDNSQNVDKYFVDDPVQYNNHIDSNDQSHNSNTSNHAHRDANELGNTIDLTTEIQTECNIKDELFEILPKKVQCNDQVDSNYQSHNSNQAHHDANELGMAIDLTMTIQTECNIKDELFEISPKKEFYESFGSDSHEAFSEEIIHNTQVNSLKNVEEDVNTYNTESASNSKQSIPTISKGDTKSLKIVANIDESNSFGCDICNKMFKTKFSVQAHITRVHSGMRLYPCEHCGKTFTRAGNLKIHQQRHMSKCVFCCDICGKMFKLKTDVQKHIRQVHNEEYPCEQCGKTFKRSSILLKHKLVHTAKRNYTCDICGKMFKSKWSIQVHITTVHSEERTYPCVQCGKTFKLPSDLKSHKLVHTGECAFGCDICGKMFKTKYSIQVHNTRAHSERAFGCDICGKMFKFKADVQVHKQVHNEVRPYPCEQCGKTFKRSSTLSHHKLVHTGNRNYTCDICGKMFTSKWYIQVHITTVHNEARSYSCAQCGKTFKWQRSLYKHKLVHTGEHSFGCDICGKTFKIKTDVQKHTRQVHSEHPYPCAQCDKEFKSPAKLRRHQLAHTDKRPFGCDICGKMFKRKSEVRVHSRHVHKEAHQDSKARLYPCDQCDKVFDLPSKLKIHQRVHTSECPFSCDICGKRFKTKSYAKIHTRLVHSEARPYPCAQCGKAFKLSRTLKEHQRLHKDERPFSCDICGKKCKTKSDVQKHTKQVHNEARPFACVQCGKAYKFRSKLKIHQILHKSARPFSCDVCGKTFKIRYHIQQHIQTTHMKKLTTKRNKIKKYSVQNDKLSRVNKASRVDKDLNEHEGQS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -