Badu026352.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026140.1:11278507-11295923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.88 83 4.8 0.3 1 23 256 279 256 279 0.92 2 9 0.01 0.97 10.9 3.0 1 23 381 404 381 404 0.96 3 9 8.1e-06 0.00077 20.6 3.3 2 23 409 430 408 430 0.97 4 9 0.81 77 4.9 3.1 2 23 438 458 438 458 0.95 5 9 7.9e-05 0.0075 17.5 0.7 1 21 464 484 464 489 0.94 6 9 0.00035 0.033 15.5 0.4 1 23 497 520 497 520 0.94 7 9 3.1e-05 0.003 18.8 0.2 1 23 526 549 526 549 0.97 8 9 9e-06 0.00085 20.5 0.8 1 23 559 581 559 581 0.94 9 9 0.0011 0.11 13.9 3.2 2 23 588 610 587 610 0.96
Sequence Information
- Coding Sequence
- ATGGAACAGGACGTCGATAGCGGATACAGAGCAGTTTGTACGACATGCCTTAGTAGCGACCGAAATTTATTCCAAATTAATTCTCTGGATTCTTTGTATCAAAATATGTTTCGCTTATTGATGTATGATTTCGCAGCTGACAGGTTTGGTGATACCTTGGAAATGGAGCAGCTAGCATGCTGGGAGTGTGTTGCGTTGCTGAAGAAATCAGCACACTTTAAACGGCAGTTGCATGCAGCACAGGAGCATCTCAGGGTCCTGGCCTTGAGCCGCAATCAGGATGCGATGGATCACACATACATGTCTCAGTCCCTGTCATCATTGGAGATGACGACAAAGACTGAATACGATAAGATCTACTTCGATTACACAGCCCAGCCGGAATGGACAACGGAGTACATCGTCAGTACTGACATGAACGATGTGAAGAACGAACAGTATGACATAGTGCAAGCAGTAAGGGACAATATAAATCTGGATATTGATGAGCATATGCTGGAAGTGCCGGACCTAGTGCTAGCAGGGCCGGACTCAGTGGGGACCGTGACACATGTGGTGGGGGTGGTAGGGGGTGCTTTGGTGCCGCAAGATGTTAAGGGAGAGCTCACGGAGATCACTAGTGAAACGCAGCTAGTCCAGCCGCTGTCGACGGCGACCGAAACCAAGGAGCCGAAGCCTACCTACACCACTGAATACATGTCTCTGGCCGATATGAACGCTTCCAGGGAGGAAATGAAGGAGAAGGTGCAATACGCGAGCTCCGTGTACAAATGCGAGCTCTGCATCATCGGGTTCTACACACAGCAGCAGGTCGAGACGCATTTCCTACAGGCGCATAGGGCTAAACGCGGCCACACCGCCTGCAAGACCTGCTACGTGTACATAGAGGAGTCCAAGCTGCCCGAGCACACCGACAGCCACTTCCTGCGGCACTCGTGCAAGCTGTGCGGCCACGTGGAGTACAGCGGCACGCTGGCCCGGATGCACGCCGGCACGCACCTGGCCCGGCAGCCCCACAGCGGGGTCATCAAGATCGGGGACGCCGGGGCCTCGGTGGGCAGCAAGGGCCAGAAGCGTCGCGGGCCGGCACCGCGGCCGGGCGACCTCCGCAAGCTGCTCTCCAAGACCACCATCGAGGGCTACCAGTGCCTCGAGTGCGATATGTTCTTCAAGAACTCTCGCGCCCGCAAGAACCACGTGGCGCGCTGCCACCGCGAGGGGCTGCAGTGCGACCACTGCAAGAAGCGGTTCGTCAACCGGACCACGCTCGCCACGCACATGAGGCTACACGAAGGACCCCTGCCCCGCGAGGAGTGTCCGATCTGCCACAAGATGGTGCGCTGCATACAAATCAAGTACCACATACAGCGGCATCAGAACAAGGGCAGGTTCGAGTGTGTGGAGTGTAACAAAGTGTTCTCGCACGCGGCCACCTACCAGGCACATCTCAAGTATTCCAGGGCGCACGCCACGGAACAGATATTCAAATACCCGTGTCCGATGTGCAACAAGGGCTACCCGACCAAGGAGCAGATGCAGGACCACTTCAACTACCAGCACCTAGGGAAGACACAGCACAAGTGCCCTGTGTGTGATAAGCCGATAGCATCCAAAGCCAACGTGGAGAAGCATATGATGCGGGTCCACGGCGAGAAGAAGGAGAAACCAAGGAACCATACTTGCCAGCAGTGCGGGAAGGCTTTTACGGACAAGAAAGCCCTAACGCAGCACGCAGTGATCCACAGCGGGGACCGTCCCCTACGCTGCGACGCCTGCCACCAGACCTTCAAACAGAAGGCCTCATTATACACGCACAGGAAACGAGTACACAAACTGTTCCCGCCGAAAAGGCAGGTCGAGTTCATGGACAGCAAGCCGGACGGGTGA
- Protein Sequence
- MEQDVDSGYRAVCTTCLSSDRNLFQINSLDSLYQNMFRLLMYDFAADRFGDTLEMEQLACWECVALLKKSAHFKRQLHAAQEHLRVLALSRNQDAMDHTYMSQSLSSLEMTTKTEYDKIYFDYTAQPEWTTEYIVSTDMNDVKNEQYDIVQAVRDNINLDIDEHMLEVPDLVLAGPDSVGTVTHVVGVVGGALVPQDVKGELTEITSETQLVQPLSTATETKEPKPTYTTEYMSLADMNASREEMKEKVQYASSVYKCELCIIGFYTQQQVETHFLQAHRAKRGHTACKTCYVYIEESKLPEHTDSHFLRHSCKLCGHVEYSGTLARMHAGTHLARQPHSGVIKIGDAGASVGSKGQKRRGPAPRPGDLRKLLSKTTIEGYQCLECDMFFKNSRARKNHVARCHREGLQCDHCKKRFVNRTTLATHMRLHEGPLPREECPICHKMVRCIQIKYHIQRHQNKGRFECVECNKVFSHAATYQAHLKYSRAHATEQIFKYPCPMCNKGYPTKEQMQDHFNYQHLGKTQHKCPVCDKPIASKANVEKHMMRVHGEKKEKPRNHTCQQCGKAFTDKKALTQHAVIHSGDRPLRCDACHQTFKQKASLYTHRKRVHKLFPPKRQVEFMDSKPDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -