Badu025655.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026140.1:805925-826984[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0026 0.25 12.8 1.4 1 23 517 539 517 539 0.97 2 12 1 97 4.6 3.9 1 23 546 568 546 568 0.95 3 12 4.3 4.1e+02 2.6 1.2 1 23 572 594 572 594 0.94 4 12 0.00094 0.089 14.1 2.4 1 23 599 622 599 622 0.97 5 12 0.0074 0.7 11.3 0.2 3 23 627 648 626 648 0.96 6 12 0.078 7.4 8.1 0.2 2 22 655 675 654 675 0.94 7 12 0.00045 0.043 15.1 0.1 2 23 687 709 686 709 0.92 8 12 0.016 1.5 10.3 0.5 2 23 714 735 713 735 0.96 9 12 0.011 1.1 10.8 0.1 3 23 772 792 771 792 0.97 10 12 5.8e-06 0.00054 21.1 5.7 1 23 798 820 798 820 0.98 11 12 0.0001 0.0099 17.1 5.0 1 23 826 848 826 848 0.98 12 12 0.00016 0.015 16.6 3.6 1 23 854 877 854 877 0.98
Sequence Information
- Coding Sequence
- ATGGTTGTATGTGCAGTGAAATTGTGTAGAAACTACACGGGGAAAAACATCAAACCTCCAGAAGGAATCTCCTTTCATCGGTTCCCAACGGACCCAGACCAGAGGCAGGAATGGATCCGTAGCCTCCGCCGGGAGCCCGCCTGGGCCCCCGGCACGCATTGCCGAGTGTGCTCGGTGCACTTCGCCAGCGCAGACTTCAAGGTCTCCGAGACTGGCCGAAGGATACTGCTGAAGGAGGCAGTTCCGACCAAGAACTTGTACAGGGAGGAGCGGTCTGATACTGACTTTGGAGCGGCTAGGAGGGTTAAGAAAAGTAATAAATGGGACAAGGACGTCAATGTGACTGGGACAACGCAGGAGGCACCTCTACAGTCTTCACTGCTTACGCCATCATCGCCATCACTGCCGCCGCAGCCGCCGCAGCCGCCGCAGCCGCCAGCGCGCGCTCGCCCAGCGTCATCAGGGGTCGCGTCGCCGCCGCCGCGGCAACGATCGCCAGAACCGACTCCAGTCGACTCGGCGGCCGCTTCATGTGTTAGTTCGCCTGATGCGACGACGGCGGAGGAACCGCGGTCACGGTCTTCGGGGGAGGATGAGGCGGAGAGAATGTACGGTGAGGAATTAGACTCCACACTGCGGCCTCGACAAGATGATGAGGAGTTTCATGAGGCAGAGGCAGAACCTCTAATCCCAGAGAGACTAAATCTAAGGCCCAAAGGGTCCACTTCCGAATCTCCTGATGGTCTGGAGGCGTGCAGGGCATGCCTCGCTACTGACACCAGGTTCTACGATCTCACCGAAGATCTGGCTCATACTTTTGCTGATGTTACTGGGCATTCGGTTACACCATCAGACAATCTTCCTCATCTTCTATGCGCAATATGTTGTACGGTCCTGCAAAAATGCGCGGACTTCAGGCTGCGGTGCGACGTGGCCCGGGCGGTACTCGACGAGGCTTTGGCTAAGGAAGACAGTGTGACGACAAACTTCGTACGCAATATAGACAGGTCCTTCCATAACCTCTCTCTAAATCTCACTGTAAAGAAGCAACCACTGATTGACGTGACAGAGATAGACATAAAACAGGAGCACATCGACCTTATGCTGGACGAGGATAGCAATAATGACGTCACAATGGACGATGCCTTCGACATTTTCGAAGAAAAGGACGAAAAAGTTTTCGAAGAAGTGAAGACGGAAAGTGAAACAATACTATCAGAAGTGAACGGTGAAATGTACACAAGCGAAGAACCTAAAAGAGAAATATTTGTCGAAGTCAACACAGATAGGGTAGAGAAAGAGGTTAGAAGTAAAAAGAAGAAAGAAGTTAAGAAGAAGAAGAAATCGAACAAAGAAATAACGGTATCCTTAAAGGTGTTGAAAGATAGTACAAAAGAAGATATAAGAAATACGAAAGCTAGGAAGACTGATGAGGATTACGAAGTATTCGCTAAGCAGTATAACGTTGATATTGTTTTCCTTAGCAGAGAGGAGCAGATAGCTGAAGTACAAGCTAGGAAAGAGACAGATAATTACAAAAACTCTAGGTTCAAATGCGATGAATGTTTCAAAGGCTTTACAGGGGAGACTGCTTTCAAAAATCATAAGGCGAAACATGATCCGAGCATAGGCAACTACGTCTGCGAGCCTTGTGGCTTTAGATTTCCCAAACGATATAAAATGCTGCACCACCTAACGCACCATAAGATGAACTTCGCGTGCAAACTTTGCGAGCATGTTAGTAAATTGCCATCCAAAGCGAAGGAACACTTCAAGTGGCACAACGGGGTGAAATATCCTTGTCTGTATTGTGAGAAATCTTTCATCAAACGAACATCCCAATTCAACCACATGCGAAACCGACACGGCTCGGCGTGCTGCGACATTTGCCAGGAGATCTTCTCCGGCGAGCGCGGGCTCAGCGCGCATATGATCAAGGCGCATAAGGAGGCGGTGAAATCTCGCTGCGTTTCCTGCGGGGTCCAGTTCCACACGGAGGCGGCGTTGGAGCATCATATCAACACCTCCATTGGGATGGCGTGCCGGCCCGGGTTTACGTCCTGCCCGCAATGCGGTGAGAACTTCGAAACAGCAGACATGTTGAATGCTCACTCAAAAGAGAACCACTGGAAAGAAATCAAGTGTGAGAAGTGTAACGCAAACTTCGAGAATGAGAAGTTATACCGGATGCATCGAATAATACACAAGGAGTTTAGGGAGAGGCGGCCGCGATCCGAACTCACCAAGCCCATGAAAGGCGGCAAGCCGGTCCGCGGCAAGCAGAAGAAGCCGCAGCACATACAGAAGCGGATGTGCGAGATGTGCGGACTCACTTGGCGGAGCGCAGCCGCCCTGCGCTACCACCAACGAGTGCACACGGGTGAGAAGCCGCACCAGTGTCCCGTGTGCCACAAATGCTTCAGGATACAGGATTCATTGCAGATCCACATGAACACGCACACGGGCGCCCGTCCGTTCCGCTGCCCGCATTGCCCCAAGGCGTTCAAGAGCAGGACGCAGAACCACAAGCATCAGCTGGTACACACGAAGATTCGCCGCTACCGCTGCGACCTTTGCGACAAGACCTTCCAGACCTCGACCTGTGTTAAAACCCACATAAAGACAGTTCACATGAAGATACCCATGCCCCCAAGAGCCAGGAACCGGAGAACAGATGAGGCTCATACACATCAGATTGACAACGCGTATATACATAGCATGAAGATGGATGTTATGGGCGGGACTTAA
- Protein Sequence
- MVVCAVKLCRNYTGKNIKPPEGISFHRFPTDPDQRQEWIRSLRREPAWAPGTHCRVCSVHFASADFKVSETGRRILLKEAVPTKNLYREERSDTDFGAARRVKKSNKWDKDVNVTGTTQEAPLQSSLLTPSSPSLPPQPPQPPQPPARARPASSGVASPPPRQRSPEPTPVDSAAASCVSSPDATTAEEPRSRSSGEDEAERMYGEELDSTLRPRQDDEEFHEAEAEPLIPERLNLRPKGSTSESPDGLEACRACLATDTRFYDLTEDLAHTFADVTGHSVTPSDNLPHLLCAICCTVLQKCADFRLRCDVARAVLDEALAKEDSVTTNFVRNIDRSFHNLSLNLTVKKQPLIDVTEIDIKQEHIDLMLDEDSNNDVTMDDAFDIFEEKDEKVFEEVKTESETILSEVNGEMYTSEEPKREIFVEVNTDRVEKEVRSKKKKEVKKKKKSNKEITVSLKVLKDSTKEDIRNTKARKTDEDYEVFAKQYNVDIVFLSREEQIAEVQARKETDNYKNSRFKCDECFKGFTGETAFKNHKAKHDPSIGNYVCEPCGFRFPKRYKMLHHLTHHKMNFACKLCEHVSKLPSKAKEHFKWHNGVKYPCLYCEKSFIKRTSQFNHMRNRHGSACCDICQEIFSGERGLSAHMIKAHKEAVKSRCVSCGVQFHTEAALEHHINTSIGMACRPGFTSCPQCGENFETADMLNAHSKENHWKEIKCEKCNANFENEKLYRMHRIIHKEFRERRPRSELTKPMKGGKPVRGKQKKPQHIQKRMCEMCGLTWRSAAALRYHQRVHTGEKPHQCPVCHKCFRIQDSLQIHMNTHTGARPFRCPHCPKAFKSRTQNHKHQLVHTKIRRYRCDLCDKTFQTSTCVKTHIKTVHMKIPMPPRARNRRTDEAHTHQIDNAYIHSMKMDVMGGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207979;
- 90% Identity
- iTF_00207979;
- 80% Identity
- iTF_00207979;