Basic Information

Gene Symbol
Zfpm1
Assembly
GCA_907269095.1
Location
OU026117.1:19119641-19133153[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.6 1.5e+02 4.0 0.3 2 23 6 27 5 27 0.96
2 14 0.0017 0.16 13.4 0.3 2 23 1021 1042 1020 1042 0.95
3 14 2.2 2.1e+02 3.6 0.4 1 23 1122 1144 1122 1144 0.95
4 14 1.7e-05 0.0016 19.6 1.7 2 23 1147 1168 1146 1168 0.97
5 14 0.023 2.1 9.8 3.0 1 23 1174 1196 1174 1196 0.98
6 14 0.0082 0.78 11.2 2.5 2 23 1203 1224 1202 1225 0.95
7 14 0.35 33 6.1 1.0 5 23 1238 1256 1237 1256 0.96
8 14 0.02 1.9 10.0 1.1 3 23 1263 1284 1262 1284 0.96
9 14 0.0036 0.34 12.3 0.1 2 23 1301 1321 1300 1321 0.97
10 14 0.00022 0.021 16.1 2.6 1 20 1327 1346 1327 1349 0.91
11 14 0.00066 0.063 14.6 0.2 1 23 1357 1379 1357 1379 0.98
12 14 0.0058 0.55 11.7 7.2 1 23 1385 1407 1385 1407 0.98
13 14 6.8e-06 0.00064 20.9 1.3 1 23 1413 1437 1413 1437 0.98
14 14 0.0015 0.15 13.5 5.1 1 23 1443 1465 1443 1466 0.95

Sequence Information

Coding Sequence
ATGGATCAGCTGGTGCAGTGTCCTGTGTGCACACTGTTTCTGCACAATGGCATGTCATTGGAATCCCACCTGGACACACATCCCAAGGACCAGGTCATCAAAGCTTTGTGCAACTTTTCTAAGAATAGTAATTATGGGAGCCGAACACCAACTCCTCTGCATTCTGAACGTTCTTATCGAAGCAGGTCTCGAACACCTGCTGAAGATAGCATGCGCTGGTCAGTTTCTCGCAGTGCAGAGCATGACCGTTATTGGCGTAGAACACCAAGCCGCACTCCGAAACCAAATTCCTCTAGAGTTACTACTCCAACCTCTGAGGTCAGAATGCCTGACATTAATTTTGATAATACAGTAAATAATTTGAGTCAATACAGTGGTTCTAGCTTTATGAAAAATGATAAAACACAGCCGACATTCATTCAGAATTCTTCCATTCCTGAGTTTGATCAACCATATGTTTATTATCAAGATCATCAAGAAGACAGAGAGATAAAATATTCACGGAGTGCAGAGTACACTGCTCTTGACAGTGCAAACAATGTGTTTACTTACAATATGCAGTCTGTTGCACCTGGTGGTATGAAACTCCAGACATCTTTGTTACCGAGTGTACCTAGAAGAAGCAATGATCTTGTTAAGTTACTTCCCAAGCCAAACAATATTCTGGTCAAGACTAATGTAGGTGGAGTTCAATACATAGCCCCCGGAGTCAAACCTATGCATATGATGGTTCCAACGGCCCCCACTTTTGTCCAGAAGAATGTACAAAGCAACATGATTATGAGTGGTGGCATACCTTCTTCGCTAATGCTTGAACACAAACCTATAGCTCCACCATTGAATTCCAGTCAATACAATCAGACTTCAAATTCATTCACTCCTGGCACAACAGTTGTTACTCAAAACTCTCAAATAATTTACAGAGAAATGGTTCACAACATTGATGGGAAACCCATTATATCTAGTATGCCAGCTGTCCTTAGTGGTAATGAGAATGTTACTAACATGGCTCAAACTAGTTCCATGTACCAAAATGTGATGGTTGTTGACCAATTTGGTAATACATCTTGCATGTACTCAAGTCCACAATCAATCCTACCCAAACCTGCTAACACACCAGTTTATAATAATAATGTGTCTCATGGGTCAAGTAAAATAGAAAAATCTGTACCAAATATGACAAATGACTTCAATAAGACTCTTGTAATAGAAGTAGGACCCATTGTTCCCTCAGTACCGGTGGGCACATGTGAGCCTTTACCCAAATCATCTAGTTCTAGAACTACTGGTACAAATTCACCTAAAGTATTCACCCATAGCAAAAGAGATAAACCTACAGAAAAAGAGGGAAAAAATGAAGCTCCTGGTTCAACTAGAGGACTTAAAATCCTCAGTAACATTAAAGTTGAAGTGCCTGTTCAACATAATAAGAACATGCTCAATACCATTTTGGACTTAACTGGTCCCAATGACGGTGAATACCAAGAGCGACCCATATCACCAGGCAAGATTTTACCAGATCTAGAAGTAAACTCAAAAAATGATTCATCTGATGATGTTGTACAGTCAACAAGTTCTGAGGATAAAAGTCCCAATTTATTCTCTGTAATAAAAAATGTTGGAAATCCTCCTTCTTACAAAGACTCCGTTAAAAGCCTAGAAAATAAAATTGATGCAGAATTTTCAGATAGTTGCCCTGTTCCTGATTTAATATGTAATGAGAAACCTTCAATCTCACCATGTAGTGAACTGTCAGAGAACGGTGAGAACTCGACTGATCGCACTTTATTGTCACCTAAACCACGGGCTCAAGCTAAACAAAAAACTAAAAAATCAAGCTGCCAACCATCTTATTCAACTGCAACCAGTAGTGTTAAAATGGAACCAAAAGTTAGAGTCAGTTTGCCACCTCGTTACAGTCATCCTTTACGACTGAACAATCTCTATGTAAAAAAGAGTAAGAAAGTCTTGCAGATCAAGAATGCCAAAAATGTTACAGCTACAGCTACCTCAACTGTCTCAAGTACTGTTACAGAGCCTATTGCATCATCATCCTCTTGCAGATCACCTGAGAATTTTACCGTAACTAAGTTGCACCATGAGAGAAATAGCAGTGAACCTAGTACTTTACAAACTATTTCCATTGAGAAAATTAAAGATAATGATATTGATGATCAGGACGAATTCGATGCTGATACTGAAGAGCAGTCTATGGACATTGAACCTGTACCTCCTTCGAGTTTAAATTCCAGTCAGTTCTCGACGAGTATAGACATAGTGCAGGTGAAAGAGGAAATTAATTCTAGCAACGAGAGTGGATTCAAGAATGAACCTGGTACTTCAGACCGGCATCTAACGCAATTGGAAACATTGCGTCCCATCAACGTGATCACTTACGGGAACATGTCGGCCGGAGACTTCGACGACGAGTCTAATCATAGGGAATTGCTCGAGTTGGAAGCTGCATCGAAGAGTAAACAATTTGTGAATATGATGAACGACAATTACTTTGGGGACAATATTTATGCTGATTATTTCACGCCGAATAGGTCGTTCGAGGAGAGGGAGTCCTCGTTCAATAAGGATGGACCGAGTCCGAAGGAGGGGATGTACCTTTGGGGCGAGCCGTCGCAGAAGGAGAGTGAGTTCGTGCTTCCGAATTTCATACACGAGAGTTACAAGATAGCGGAGAGCAATGTGGAGTTTGGTGATATGTCGGCGAGCCCCGCTCCCGGGGAGGGTGCGGAGGCGTCGGAGGCGGACGGGGAGGGCCGGGACAGCAAGGCGGACGTGCTGAGCGAGAGCCGCAGCGAGGGCGAGCCGCCGCTGGACATCTGCGCAGACGAGCGCATGCCGCCGCGCGGCGAGCTCAGCGGACAGGAGAGCAACGGCGACATGGAGTCGTCCTGGACCGGGCTGTACACGGATGTGCCGGCAGCGGAGCCCTACGACCTGATCGCGCGCGAGAGCTGGGTCTCCGACGGCTCCGAGGTGGACCAGACCGAGAAGAGGGACCCACTCGAGGACACGCTGCCCGCATCGTTCAGCAAGTCCCGGCTCCAGTGCGGCGTGTGCGGCGCGACGTGCAGCTCCCCGCGGGAGTTGCGCTCGCACCGCGCGCTGCACGCGCCCGCCACCACCAAGACCTCATACAGCCGGATGGTGACCGCTCGCACCGTCATCAAGAAGGAGGAGAAGCCGGATGAGGGCGCGCTCAATGTTGCAGGCAGCATGCTCTCGCTGGACAGCAAGGAGGCGATCGCGAAGTCGGTGTTCAACGTGTTCGACCCCGACCCCGTGGCCGAGGACAAGTCCAAGATCGAGAGGCTGATCAAGCAGGAGCCCAAGCGGCGCCGCAAGGACTACGTCTGTCCTACTTGCAAGGTGGACCAGGTGACGGAGTCTGCGTTCCACGTCCACCTGAAGCTGCACCCGCTAGAGTGCCTGACGTGCGGGAAGTGCTTCTTCCGGCGAGCCAACCTAGCGCTACACATCAAGACGCATCTCGGCATCAAGAACTATAAATGCGAGGTGTGCGAGAAGCGTTTCCTGACGCGGCAGAAGCTGTCGGAGCACCACAACGTGCACACCGGCCGAGCGCCCGTCAAGTGCACCGTCTGCGACGACACCTTCCGGCGGTACTCCAACATGGTGCAGCATCGGGACCGGCACCACTTCCAGAAGAAGGGCAAGGTGCGGGACTTCGTCTGCCAGTGCGGGGCCGTGTTCCACTCGCGCGCCAAGCTGCTCTGGCACCGCGAGACCCACGACCAGCGGCCCAAGGCCTGTCTGTACTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACCAGGCACGTGCGACGGTCTCACAACGAGTACTACCTGTCGGAGCGTGCCAAGGCCACAGCGGAGAACGTGCCGTGCCCCGTCTGCAAGCAGGTATACCTGCGCTCGAACCTTCGCGCGCACCTGCTCACCCACAGCGGCAAGCGGCCCTACCACTGCGTGGTCTGCAACAAATCCTTCACCACAAAGTGGAACCTGAAGCTCCACCGGTGGACCCACATGAGCCGCTCCGCCAAGCCCTACAAGTGCTCCCTCTGCAAGGGCGCCTTCATCCGCCAAACGGAATACATAGCGCACATGAACGCCCACAAGTCTGTGCGCCCGTACACTTGCAACTACTGCGGCTGTCAGTTTATTCGCAAGTATAATTGCCAGCGGCACGTGAGGGAGCACGAAATGGCGAAGAAGTACGTGTGTAAGGTCCCCGAGTGCGGTAAGTCGTTTCATAGAAGCTACTATCTCTCTGAGCACATGAAAGTTCACAGTGGGGCGCGGCCGTTCTCCTGCTCGATTTGCGGAAAGACTTCCAGCAACAAATCGAACCATAACAAGCACGTGAAGATCCACCACGCGCGGGAACCGATCGCCACGGAAGCCTAG
Protein Sequence
MDQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCNFSKNSNYGSRTPTPLHSERSYRSRSRTPAEDSMRWSVSRSAEHDRYWRRTPSRTPKPNSSRVTTPTSEVRMPDINFDNTVNNLSQYSGSSFMKNDKTQPTFIQNSSIPEFDQPYVYYQDHQEDREIKYSRSAEYTALDSANNVFTYNMQSVAPGGMKLQTSLLPSVPRRSNDLVKLLPKPNNILVKTNVGGVQYIAPGVKPMHMMVPTAPTFVQKNVQSNMIMSGGIPSSLMLEHKPIAPPLNSSQYNQTSNSFTPGTTVVTQNSQIIYREMVHNIDGKPIISSMPAVLSGNENVTNMAQTSSMYQNVMVVDQFGNTSCMYSSPQSILPKPANTPVYNNNVSHGSSKIEKSVPNMTNDFNKTLVIEVGPIVPSVPVGTCEPLPKSSSSRTTGTNSPKVFTHSKRDKPTEKEGKNEAPGSTRGLKILSNIKVEVPVQHNKNMLNTILDLTGPNDGEYQERPISPGKILPDLEVNSKNDSSDDVVQSTSSEDKSPNLFSVIKNVGNPPSYKDSVKSLENKIDAEFSDSCPVPDLICNEKPSISPCSELSENGENSTDRTLLSPKPRAQAKQKTKKSSCQPSYSTATSSVKMEPKVRVSLPPRYSHPLRLNNLYVKKSKKVLQIKNAKNVTATATSTVSSTVTEPIASSSSCRSPENFTVTKLHHERNSSEPSTLQTISIEKIKDNDIDDQDEFDADTEEQSMDIEPVPPSSLNSSQFSTSIDIVQVKEEINSSNESGFKNEPGTSDRHLTQLETLRPINVITYGNMSAGDFDDESNHRELLELEAASKSKQFVNMMNDNYFGDNIYADYFTPNRSFEERESSFNKDGPSPKEGMYLWGEPSQKESEFVLPNFIHESYKIAESNVEFGDMSASPAPGEGAEASEADGEGRDSKADVLSESRSEGEPPLDICADERMPPRGELSGQESNGDMESSWTGLYTDVPAAEPYDLIARESWVSDGSEVDQTEKRDPLEDTLPASFSKSRLQCGVCGATCSSPRELRSHRALHAPATTKTSYSRMVTARTVIKKEEKPDEGALNVAGSMLSLDSKEAIAKSVFNVFDPDPVAEDKSKIERLIKQEPKRRRKDYVCPTCKVDQVTESAFHVHLKLHPLECLTCGKCFFRRANLALHIKTHLGIKNYKCEVCEKRFLTRQKLSEHHNVHTGRAPVKCTVCDDTFRRYSNMVQHRDRHHFQKKGKVRDFVCQCGAVFHSRAKLLWHRETHDQRPKACLYCSDKFVHAASLTRHVRRSHNEYYLSERAKATAENVPCPVCKQVYLRSNLRAHLLTHSGKRPYHCVVCNKSFTTKWNLKLHRWTHMSRSAKPYKCSLCKGAFIRQTEYIAHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCSICGKTSSNKSNHNKHVKIHHAREPIATEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00209183;
90% Identity
iTF_00209183;
80% Identity
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