Badu017427.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026141.1:5938558-5941098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.052 4.9 8.7 0.2 3 23 14 34 12 34 0.95 2 15 8.8e-05 0.0084 17.4 0.3 1 23 38 60 38 60 0.98 3 15 0.005 0.47 11.9 1.3 1 23 65 88 65 88 0.94 4 15 0.081 7.7 8.1 0.3 2 23 98 120 97 120 0.96 5 15 0.00064 0.061 14.7 0.5 1 23 127 150 127 150 0.97 6 15 0.093 8.8 7.9 0.7 2 23 161 183 160 183 0.96 7 15 0.018 1.7 10.1 1.3 2 23 211 233 210 233 0.95 8 15 3.5 3.4e+02 2.9 4.4 2 23 257 278 256 278 0.95 9 15 2.1e-05 0.002 19.4 0.3 1 23 282 304 282 304 0.98 10 15 6.2 5.9e+02 2.1 1.3 1 23 309 332 309 332 0.77 11 15 0.0029 0.28 12.6 0.6 2 23 342 364 342 364 0.93 12 15 4.1e-07 3.9e-05 24.7 0.8 1 23 371 394 371 394 0.98 13 15 0.001 0.095 14.1 4.1 1 23 400 422 400 422 0.98 14 15 4.1e-06 0.00039 21.6 3.1 1 23 428 450 428 450 0.98 15 15 1.1e-05 0.001 20.3 2.6 1 23 456 479 456 479 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTCAAGCTAAGTGACGATGGCGAGGTTATGGCCTGTGCTCTATGTGGCTACACTTTCGAGGCTTTTCCGACGTTACTGCAACATATGCACGGACACTACAGGAATTTTATATGCGAGCAATGCGATGCTGGTTTCATAAACCAGCGCAAGTTGATGACACATCAGAAAATCCACGAGACGGGCACTTTTGAATGCTTGTTCTGCCCCAAAGTGTTCACAACTTCTGTGAAGAAAACGAGTCATGAGAAGTACGTTCATAAGAATATTGCTGGAAAACGGAACAAGAAGTGTCCCCTTTGCGTGATGCTGTTCCCGGACTACTATAGCAGGAATAGACACATTTTAAAAGACCACAAATCTACCACTGCGACTTACAAGTGCAATATATGCGACAAAGTATACCTATTGAAGTCGCGGCTCTCGAATCACATAAGAGAAGTGCACCTAATGGAGAGAAACCACAAATGTCGCATCCAATGCTGTCAGTGTCAAGAGAATTTCCTCAACTTGGCACTTTTGAAAGTGCACTTGCAGTCGGCACACAGCAACGACGTGTATCGTGCATTGGACGTGGCCAGTCAAGATCGCGATAACGTCTTCTGCAGAATGGACACAACAAATCTAAAATGTAACTTTTGCGAGCATAACTTTGACATACTGTCGAGTTTGAAGGAACATCTAATAAAGGAGCATAATGTAAATTTCTTGCCCGAAGAAAAAAGTTATATAATGGAGTTCAAGCTGAGCGACAGCGAGGTTATGAGCTGTACTCTATGCAGCTACACCTGCGAGGCGTTTAAGACGTTATTCCAACATATGCACGGACACTACAGGAATTTTATATGCGAGGAATGCGATGCTGGTTTCATAAATCAGCGCAAGTTGTGGACACATCAGAAAACCCACAAGATGGGGACTTTTAAATGCTCGTTTTGCATCAAAGTGTTTCCAACTTATGTTAGACAAATAGGTCATGAGAAACGCTATCATAAGAGCGTTGCTCGAGAACAAACCAGGAAGTGTCCCCTCTGCGAGAAGTCATTTACCGGCTACTATCACAGGAATATACATCTAATAGAAGCACACAACTTCGCCGCTGCGACTTACAAGTGCAATATTTGCGACAAAGTATACCCACAGAAGGCGTATCTCTTAAAACATACAAGAAAAGTTCATTTAATGGAGAGAAATCACAAATGTACAGAGTGTGGGGACGATTTCTTCTCAAAGCATGCACTGAAACAGCATATGATCCGGCATACAGGCGAGAAGACCCACAAATGTACAGAGTGTAACAAAGCTTTCGCTCTAAAAAAGACCCTCAGAGAACATATGAGGTCGCATAACAATGATAGGAGGTTTAAGTGTAAACTATGTGGATTGGCGTTCGTACAAAAGTGTAGTCTCAAGAGCCATATGTTATCAAATCATAGTGTCGTTTTAGCGGACCTTGAACAAGCGAATCCGAGTTTGTGA
- Protein Sequence
- MEFKLSDDGEVMACALCGYTFEAFPTLLQHMHGHYRNFICEQCDAGFINQRKLMTHQKIHETGTFECLFCPKVFTTSVKKTSHEKYVHKNIAGKRNKKCPLCVMLFPDYYSRNRHILKDHKSTTATYKCNICDKVYLLKSRLSNHIREVHLMERNHKCRIQCCQCQENFLNLALLKVHLQSAHSNDVYRALDVASQDRDNVFCRMDTTNLKCNFCEHNFDILSSLKEHLIKEHNVNFLPEEKSYIMEFKLSDSEVMSCTLCSYTCEAFKTLFQHMHGHYRNFICEECDAGFINQRKLWTHQKTHKMGTFKCSFCIKVFPTYVRQIGHEKRYHKSVAREQTRKCPLCEKSFTGYYHRNIHLIEAHNFAAATYKCNICDKVYPQKAYLLKHTRKVHLMERNHKCTECGDDFFSKHALKQHMIRHTGEKTHKCTECNKAFALKKTLREHMRSHNNDRRFKCKLCGLAFVQKCSLKSHMLSNHSVVLADLEQANPSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -