Badu005835.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026115.1:14810180-14824696[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00046 0.044 15.1 0.3 2 23 214 236 213 236 0.94 2 12 0.012 1.1 10.7 0.1 1 23 267 289 267 289 0.96 3 12 0.0035 0.33 12.4 0.1 3 23 297 317 295 317 0.95 4 12 0.0026 0.25 12.8 0.1 1 23 323 345 323 345 0.94 5 12 0.0034 0.32 12.4 0.5 1 16 354 369 354 377 0.83 6 12 0.2 19 6.8 0.0 5 23 386 404 385 404 0.96 7 12 0.027 2.6 9.6 8.8 1 23 410 432 410 432 0.98 8 12 1.8e-08 1.7e-06 29.0 0.7 1 23 438 460 438 460 0.99 9 12 3.3e-05 0.0031 18.7 0.4 1 23 466 488 466 488 0.96 10 12 0.1 9.6 7.8 0.0 2 23 498 518 498 518 0.95 11 12 0.00026 0.025 15.9 1.2 1 23 532 554 532 554 0.96 12 12 3.9e-05 0.0037 18.5 6.2 1 23 560 582 560 582 0.98
Sequence Information
- Coding Sequence
- ATGAGCAACGTGGAGAGTGAAAATCCATTGGCAGAAAGTTCTTATGAGCTTGAATTGCCCTATATTTTGATCCAGCATCCAAACTCGGAAGATTTTAACCTGAACGCGTTATGTCGGGTCTGCTTAACAGCGAATAACATTAAACTGTATCCTTTATTTAGTTCTCGTGATATGCAATTGTTGTCAGAGATGTATACGACATTTACAGATACCAAGCTGGTGCCAGATGATGGGTTACCATCTAATATCTGTGAACTGTGCTGCTCACAACTTTTAAACTGTTACAATTTCAAAATGAAGTGTCTAAAGGCAGAAGATACTCTCAAGTCTTTATTGAAGGAAGAAATAGATTATAAAGATTTGCCAAACATTAACAAGTATGAACTTGATGAAGATGATGACAAATTACCGAATGCAGAAACTTTGGAAGTTGTCAAAGCTGAAGTTACAGATGTGCAATACCTAGAAGAATTGAGTGACAACCACAGTGATTGTGAGCCACTCTTTACAATCCAAAAAGTTGTCAATAGCAAAAAGGCCAAATCTTCAAAGCATAAGAATGCAGATTTGATGCACAACGGTGACAATATTGCAGAACCAAATAAAAAGTCTAATAAACGATCAAAAACCAAGTCTCTTGTCTGCTCTTCTTGTGCAAAGAGGTTCTCGACACCGCAAGCGCTGCAGAGGCACGTAACGCGCTTACACCCAGCTGCCGCCGCAGGCGTGCCTAGCTCGGATGGCTTGAATGGCTCGGATGGCTTGGCTGGCTCGGGTGGTTCGGAGGAAACCCCGGAATTCCCGTGCGGCCGCTGCCGCGCCGCGTTCGCGACGCCGCGGGACCTGGAACTGCACAGAACACTGCACGCGCGCGCACCGCCGTGGATCTGCGTGCGGTGTCAGAAGGAGTTCTCCGGTCTTGCGGCGCTCCGTCGTCACGTGTCCCGCCACATGGAGCGCAAGCGGCACGCGTGCGCGGCGTGCGGCGCGCGCTTCGCCGAGCGGTACGCGCTGCGGCGACACGCGCGCGTGCACACCGGACAGGCCGCGCCCAAGCCCTACCAGTGCGACCAGTGCGATAAACGGTTCACGACCCGCGCGCTGGTGGCGTGCCACCTGGCAGCGGCGCACGGCGGCGCGCGGCCGTGGCGCTGCGGCTGCGGCGCGGCCTTCGCGGCGCCCCGCCTGCTGGCCTCGCACCGCCGCGTGCACGACGGGGCGCGCCCGCACCGCTGCCGCCACTGCGATCGGGGGTTCCGGCACGAGTCGACGCGCAACACGCACGAGCGCACGCACACGGGCGAGCGGCCGTACGTGTGCGCGACGTGCGGGAAGCGGTTCATACAGAACAGCAACCTCACGCTGCACATGCGCACGCATACCGGTGAGAAGCCGTACGTGTGTGCGATATGCGGGCGGCGGTTCGCGTCGTGCTCGGCGCTGAAGAGCCACGGCGCGCGCCACGCCGCGCCCGCCGGCGACCACGCCGCCACTTGCGACGTGTGCGGGAAGAGGGTGGCGCTAGCGTCTCTCGCGGCGCACCAGCGGCTGCACGCGGGCCCGGCGGGCTGCGGGGGCGCGCCGCCGCGGCCGCACGCCTGCGCGCTCTGCTCGCGGACGTTCGCGCGCGCCTCGCGACTGCGCGACCACGAGCGGACGCACACCGGAGAAAAGCCGTTCGAATGCTCTACGTGCTCGCTGAAATTCACAACAAAATCGCATCTCAGAAAGCATACGAAGAGTCACGAAAACCAACCCAAGAAACTGATAAATAAGATTGTTAGCCCCCAAAACCAAGAGAACGAAATAAAGATAATTCAAGTTTTTTCGAAAGACGAAGAGAATATCGATAGTTACGACCACCATGTAAATGTCGATAGTTACGACCACGATATAGCTCAAGAGGATGAGGTGCCCATCGCAGTGTCTGAGGAGTTGGTTCTGCAGGACGACAGCAAGTCCGAATTGATCGTAGTGGACGACCAGATCGAGGACTACCAAAGCGAGGCGCTGTGCCTCAGCACCACTGGCGTGAACTTCGTCAACGATGTCAACTACGCGAGTGATGTCAACCTCGTCACGGTCGGCGGCGGGCCCGGGCTGACCTCGGCAGCCATCATGGACGCCACCAGCGTCAAACTCTACCAACTGGACCAGAGTCTGGTCCAAATACAAACCATCGCTGGACAAGTGACCATCAGTAAGATAACTAGCAAAATGACCACAAACTTCTAA
- Protein Sequence
- MSNVESENPLAESSYELELPYILIQHPNSEDFNLNALCRVCLTANNIKLYPLFSSRDMQLLSEMYTTFTDTKLVPDDGLPSNICELCCSQLLNCYNFKMKCLKAEDTLKSLLKEEIDYKDLPNINKYELDEDDDKLPNAETLEVVKAEVTDVQYLEELSDNHSDCEPLFTIQKVVNSKKAKSSKHKNADLMHNGDNIAEPNKKSNKRSKTKSLVCSSCAKRFSTPQALQRHVTRLHPAAAAGVPSSDGLNGSDGLAGSGGSEETPEFPCGRCRAAFATPRDLELHRTLHARAPPWICVRCQKEFSGLAALRRHVSRHMERKRHACAACGARFAERYALRRHARVHTGQAAPKPYQCDQCDKRFTTRALVACHLAAAHGGARPWRCGCGAAFAAPRLLASHRRVHDGARPHRCRHCDRGFRHESTRNTHERTHTGERPYVCATCGKRFIQNSNLTLHMRTHTGEKPYVCAICGRRFASCSALKSHGARHAAPAGDHAATCDVCGKRVALASLAAHQRLHAGPAGCGGAPPRPHACALCSRTFARASRLRDHERTHTGEKPFECSTCSLKFTTKSHLRKHTKSHENQPKKLINKIVSPQNQENEIKIIQVFSKDEENIDSYDHHVNVDSYDHDIAQEDEVPIAVSEELVLQDDSKSELIVVDDQIEDYQSEALCLSTTGVNFVNDVNYASDVNLVTVGGGPGLTSAAIMDATSVKLYQLDQSLVQIQTIAGQVTISKITSKMTTNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -