Badu017437.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026141.1:5996327-6008992[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.6 2.5e+02 3.3 1.0 2 23 222 244 221 244 0.95 2 19 0.085 8.1 8.0 0.3 2 23 270 292 269 292 0.95 3 19 0.016 1.5 10.3 0.4 3 23 317 337 316 337 0.96 4 19 0.012 1.1 10.7 0.2 1 23 341 363 341 363 0.97 5 19 0.00082 0.078 14.3 0.5 1 19 368 386 368 388 0.93 6 19 0.0049 0.47 11.9 0.6 2 23 399 421 399 421 0.93 7 19 0.00015 0.015 16.6 0.5 1 23 428 451 428 451 0.97 8 19 0.0038 0.36 12.2 0.7 1 23 457 479 457 479 0.97 9 19 1.3e-05 0.0012 20.0 2.0 1 23 485 507 485 507 0.98 10 19 0.0048 0.46 11.9 2.3 1 23 513 536 513 536 0.94 11 19 1.3 1.2e+02 4.3 0.7 2 23 560 582 559 582 0.95 12 19 0.07 6.6 8.3 0.1 2 23 610 632 609 632 0.96 13 19 1.2 1.2e+02 4.3 0.2 2 23 657 678 656 678 0.94 14 19 0.082 7.8 8.0 0.4 1 23 682 704 682 704 0.97 15 19 0.04 3.8 9.0 1.8 1 23 709 732 709 732 0.88 16 19 0.0088 0.84 11.1 2.4 1 23 756 779 756 779 0.98 17 19 0.00012 0.011 17.0 0.1 2 23 786 807 785 807 0.97 18 19 5.9e-06 0.00056 21.1 3.1 1 23 813 835 813 835 0.98 19 19 0.0012 0.11 13.8 0.5 1 20 841 860 841 861 0.98
Sequence Information
- Coding Sequence
- ATGGATCCTATAATTTCGTGCCAGTGTTGTCTCCTTCGACCGCCGGACAAAAGTTTAAGGAAATGCTATCGAAGAGGTGACCAAGAAGAGGTTTACTCCATCATGCTGGAAGAATGCTTTCAACTCCAATTACGTGAGGGTGGCATTTGCGAGTTGTGCGTGTCGAGGCTGCGCGATGCGTGCGACTTCAAGCGGCAGGTGCAGTGCTGCCAGCAACAACTGCAGGGCGCTGTGAATGGAGCCGCAGAGAGCAAAGTGAAACAGGAGGAGGTGGATCTGCCCATAGATTTTTTGGACGATGGCGTGAAGTCGGAACCGCCGGACTCATCAGACGATGGTCTGGAAATAGACCAAGACTACCCTCACGAGGTGGAGATAGAATGGAAGACGGAAGCCCTGGAGAGCCCTGGGGGGTGTGAGCTGGAAGCGACTGGCGTTCTACGTACAGACGGCGTCGATGAACCGTACATGGATCGGAATGAAGACAAGAAAAAGAAACCTACCAAAAGACCCGCTCGCAAGGACAAGCAGAAGTCGGTCGCTGCGGCGGGGACGGGCCCTGTCAGTCGAACCTGGGCGGTGGATGCCCACGAAGCCAACGTCCGGACCCTGATCCAGCATTCCAACTGTACGCCATTCCTCACCAGGACCATCGCCGGCACCCAATGCTGTTACTGCGAAGCGTACTTCCTCAATTTGACACTTTTGAGGGAGCATGTGCAATCGGCACACACGAACGACCAGTATCACGGCAGAAACCGCTGTAGCAATAAAGGCATCAGCTGCAAAATAGACATAACAGATTTGAAATGCAAATTGTGCGAGCAAAACTTCGCCCTATTATTGAGTTTGAAGGAACATCTAATAAAGGAACATGATGTGAAATTCATCCCCGAAGAGAAAAGTTACATAATCGAATTCAAGCTGAGCGACGGCGAGGTTATGGACTGTGCTCTATGCAGCGCCACTTTCGAGACGTTCAAGTCGTTGTTGCAACATATGAACGAACATTATAGAAATTTTATATGCGAGGAATGCGACATGGGCTTCTTAAACGAGCGCAAGTTGACACAGCATCAGTTAATCCACAATTCAGCCAATTTCAAATGCTCATATTGTCCCAAAATCTTTACAACTAGTACGATGCAAATACGTCACGAAAACTGCACTCATAGAAATAGTACTCCTATTAGAAAGTGTCCCCTCTGTGAGAAGACATTCACGAGTTACTATGTCAGGAATAGACACTTATTAGAAGACCACAACTCCACCGCTGCCTCCTACAAGTGCAGTATATGCGATAAACTATTCCCATTGAAGGAAAAACTTTCGAATCATATAAAGAATGTTCATTTGAAGGTGAGGAACCACAAATGCCCGGAGTGCGGGGACGGGTTCTTCTTTAGAACCGCACTGAACGAGCATATGGTCCGACATAAAGGCGAGAAGATCCACAAATGTACAGAGTGCAACAAAGCTTACGCCCGAAAGGGCGCCCTGAATATACATAGGAAGAAACATACCGATGACAGGAAGTTTATGTGCGGACTGTGTGGTATGCCGTTCGCGCGAAAGTGCTTTTTGAGAAACCATACTTTTCGAGAGCATGGTGTAACTTTGGAGGAGTTTCATCAAAGGAAATCGAGTCCAAAGGCGGAGGTCAGCCTCTGTGGCATCCAATGCTGTTACTGCAAAGCGAACTTCCTCAACATGGCACTGTTAAGGGAGCACGTACAGTCGGCACACGCGGACGACCAGTACCGCGATATCAACAGCAGACTGCACCGACGCAACGACCTCAGTTGCAAAATGGACATAACCGACCTGAAATGCAAGCTGTGCGAGCAGAACTTTGACCTAGTACCGAGTTTGAAGGAACATCTTATAACAGAGCATGACGTAAAATTCGTCCCCGAAGAGAACAGCTACATATACGAGTTCAAGCTGAGCGATGATGGCGGAAGTACGAAATGTGCACTATGCAGCTCCATTTTCGAGCTGTTCCAGCCGTTGGCGCGCCATATGAACAGCCATTACAGGAATTTTGTATGCAACACATGCGATATGGGGTTTTTAAACGAGTACAAGATGGCGATGCATCAGAAAATTCACGAGATGGGCACTTTCAAATGCTCGGTTTGCCCCAAAGTGTTCCAAACAAGCATGAGGCAATTGCGTCACGAGAACCACATTCATAGTAATCTACCCAGAAACCGTCCCGTCAAGAATAAACATTTACTGGGTTACGACTCCGCCGCTGGTACCTACAAGTGCAATATATGCTATAATTTATACACAACGCATATGCAACTCTCGGTTCATATAAGAAAAGTGCATATATTGCCGAAGAGACTCAAATGCCCCAAATGCGACTACGCTTCCGCCTCAAATGCCTCACTAAAAGAGCATATGATCCGGCATGTAGGCAAGAGAATCCACAAATGTGCAGAGTGCAACAAAAGTTACGCTCGCAAGAAAACCTTGAAAGAACATATGAAGATACACAACAGTGACAGGAGTTATAAGTGCGAACTGTGTGGGTTTGCTTTCTTGCAAAAAGCCACATTGAAAAGGCATATGTTTTGCATACATGGTGTAACTTCGTCAGAGTTTGAACAAGCGCAGCAGCAGCTGGCTTCAAAAGGGTAG
- Protein Sequence
- MDPIISCQCCLLRPPDKSLRKCYRRGDQEEVYSIMLEECFQLQLREGGICELCVSRLRDACDFKRQVQCCQQQLQGAVNGAAESKVKQEEVDLPIDFLDDGVKSEPPDSSDDGLEIDQDYPHEVEIEWKTEALESPGGCELEATGVLRTDGVDEPYMDRNEDKKKKPTKRPARKDKQKSVAAAGTGPVSRTWAVDAHEANVRTLIQHSNCTPFLTRTIAGTQCCYCEAYFLNLTLLREHVQSAHTNDQYHGRNRCSNKGISCKIDITDLKCKLCEQNFALLLSLKEHLIKEHDVKFIPEEKSYIIEFKLSDGEVMDCALCSATFETFKSLLQHMNEHYRNFICEECDMGFLNERKLTQHQLIHNSANFKCSYCPKIFTTSTMQIRHENCTHRNSTPIRKCPLCEKTFTSYYVRNRHLLEDHNSTAASYKCSICDKLFPLKEKLSNHIKNVHLKVRNHKCPECGDGFFFRTALNEHMVRHKGEKIHKCTECNKAYARKGALNIHRKKHTDDRKFMCGLCGMPFARKCFLRNHTFREHGVTLEEFHQRKSSPKAEVSLCGIQCCYCKANFLNMALLREHVQSAHADDQYRDINSRLHRRNDLSCKMDITDLKCKLCEQNFDLVPSLKEHLITEHDVKFVPEENSYIYEFKLSDDGGSTKCALCSSIFELFQPLARHMNSHYRNFVCNTCDMGFLNEYKMAMHQKIHEMGTFKCSVCPKVFQTSMRQLRHENHIHSNLPRNRPVKNKHLLGYDSAAGTYKCNICYNLYTTHMQLSVHIRKVHILPKRLKCPKCDYASASNASLKEHMIRHVGKRIHKCAECNKSYARKKTLKEHMKIHNSDRSYKCELCGFAFLQKATLKRHMFCIHGVTSSEFEQAQQQLASKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -