Badu017412.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026141.1:5827091-5830112[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2e-05 0.0019 19.4 0.8 1 23 12 34 12 34 0.97 2 17 0.0012 0.12 13.8 1.6 1 23 39 62 39 62 0.89 3 17 0.0023 0.22 12.9 1.5 2 23 70 92 69 92 0.94 4 17 0.014 1.3 10.5 0.9 1 23 99 122 99 122 0.96 5 17 7.3e-05 0.0069 17.6 0.1 1 23 128 150 128 150 0.97 6 17 6.8e-06 0.00064 20.9 3.6 1 23 156 178 156 178 0.98 7 17 0.00039 0.037 15.4 1.7 1 21 184 204 184 205 0.95 8 17 0.16 15 7.1 1.2 2 23 236 258 235 258 0.96 9 17 0.0036 0.34 12.3 0.5 2 23 285 307 284 307 0.95 10 17 0.051 4.9 8.7 0.1 3 23 332 352 331 352 0.96 11 17 0.00015 0.015 16.6 3.1 1 23 356 378 356 378 0.97 12 17 0.00075 0.071 14.5 1.6 1 23 383 406 383 406 0.96 13 17 0.03 2.9 9.4 1.8 2 23 414 436 414 436 0.86 14 17 0.0034 0.32 12.4 1.0 1 23 443 466 443 466 0.97 15 17 0.00057 0.054 14.8 0.1 2 23 473 494 472 494 0.96 16 17 4.9e-06 0.00047 21.3 1.5 1 23 500 522 500 522 0.98 17 17 4.1e-05 0.0039 18.4 0.7 1 23 528 551 528 551 0.97
Sequence Information
- Coding Sequence
- ATGCTGTTGTTGTTGAATGTGCACTATAGGAATTTTATATGCAAGGAATGCGATAAGGGCTTCATAAACAAGACCAAGTTGCTAATCCACCAGACATCTCACGACAAGGGCACTTTTAAATGCTCATTTTGTCCCAAAGTGTTTACATCAAAGGCGAAGAGAAACAACCATGAGAGTGCTACTCACAAACGTGGTAGATACAATGTGAAGTGTCCGCACTGTAAGAAGAGATTATCAGAGTACTCTAACAGGAATAGGCACATAATTGAAGAACACAACACCACCGCTGCCACCTACAAATGCAATATATGCAAAATATCGTTTCTAATTAAGAACCGACTCACGATTCATCAAAGAAATGTGCATCTGAAGGAGAAGAATTTCATATGCAACGAGTGTGGACGAGGATTCTTCTATAAGGCCGAACTCGTGGAGCATTTGATCCGGCATAATGGCAAGAGAATCCACAAATGTACAGTGTGCGACAAGGCTTATGCTCGAAAAAAGACACTCAAAAAACATAGGAATATACACAACAACGACAGGAGGTTTACGTGCAAACTTTGTGGTCTGGCGTTCGTGCACAAGTGCAGTCTCAAGGGTCATATGTTGTCAAATTATGGTGTGGCTTTAGCGGATATTGAATATTTAAGAGGCGAAGATGGCGCCAAAGACATAGTCGTGGTTGGTTGTGACGTAGGTATTCAATGCTGTTTCTGCCGAGAGAACTTCCTCACCTTGGCACTCTTAAAGGAGCATATGCAATCGGCACACACGAACCACCAGTATTGCGGCGGAGTCAGTCAGAGCCACATCTCCACACTCTGTTGTAAAATGGACATAACAGACCTGAAATGCAAACTGTGCGAGCAAAACTTTGACCTATTATCGAGTTTGAAGGAGCATCTAATAAAAGAGCATGATGTGGAATTCTCGCCCGAAGAGAAAAATTACATAACCGAGTTCAAGCTGAGCATCGGTGAGGTTATGGACTGTGCTCTATGCAACTCCGCTTTCGAGACGTTCAATTCGTTATTGATACATATGAATGGGCACTACAGAAATTTTATATGCAAGGAATGCGATAAGGGCTTCATAAACAGATGCAAATTGCAAATGCATCAGACATCACATGAAAAGGGCACGTTTACTTGCTCCTTGTGTCCCAAAGTATTCACGTCAAAGGTGAAGAAAAATAACCACGAGAGCACTACTCACAAACGTGGTCGATACAGAGCGAAGTGTCCGCACTGTAAGAAGAGATTCTCGGAGTACTCTATCAGGAATAGACACATAATTGAAGAACACAACACCACTGCGGCCACCTACAAGTGCAATATGTGCGACATGTCGTTCCTAGTTAAGAACCGACTCACAAATCATATAAAAAACGTGCATTTAAAGGAGAAGAATTTAATATGCAACGAGTGTGGACAAGGTTTCTTCAATAAAGCCAGATTAGAGGAGCATCTGATCCGGCATAATGGCAAGAGAATCCACAAATGTACAGTGTGCGACAAGGCTTATGCTCGAATAAAGACACTCAAAGAACACATGAGGATACACAACAACGACAGGAGGTTTACGTGCGAACTGTGTGGTTTGGCGTTCGTGCAAAAGTGCAGTCTCAAGGGTCATATGTTGTCCATTCATGGTGTGACTTTGGCGAATATTGAAGAGGCGAAGCTGGCTCCAAAGACGTAG
- Protein Sequence
- MLLLLNVHYRNFICKECDKGFINKTKLLIHQTSHDKGTFKCSFCPKVFTSKAKRNNHESATHKRGRYNVKCPHCKKRLSEYSNRNRHIIEEHNTTAATYKCNICKISFLIKNRLTIHQRNVHLKEKNFICNECGRGFFYKAELVEHLIRHNGKRIHKCTVCDKAYARKKTLKKHRNIHNNDRRFTCKLCGLAFVHKCSLKGHMLSNYGVALADIEYLRGEDGAKDIVVVGCDVGIQCCFCRENFLTLALLKEHMQSAHTNHQYCGGVSQSHISTLCCKMDITDLKCKLCEQNFDLLSSLKEHLIKEHDVEFSPEEKNYITEFKLSIGEVMDCALCNSAFETFNSLLIHMNGHYRNFICKECDKGFINRCKLQMHQTSHEKGTFTCSLCPKVFTSKVKKNNHESTTHKRGRYRAKCPHCKKRFSEYSIRNRHIIEEHNTTAATYKCNMCDMSFLVKNRLTNHIKNVHLKEKNLICNECGQGFFNKARLEEHLIRHNGKRIHKCTVCDKAYARIKTLKEHMRIHNNDRRFTCELCGLAFVQKCSLKGHMLSIHGVTLANIEEAKLAPKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -