Badu017365.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026141.1:5529009-5533895[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.24 23 6.6 0.3 1 23 167 190 167 190 0.96 2 20 0.23 22 6.6 0.4 2 23 216 237 215 237 0.96 3 20 0.0091 0.86 11.0 0.3 1 23 259 281 259 281 0.97 4 20 0.0001 0.0094 17.2 0.2 1 23 285 307 285 307 0.97 5 20 1.3e-05 0.0012 20.0 0.4 1 23 312 335 312 335 0.96 6 20 5.1e-05 0.0049 18.1 0.5 2 23 342 364 342 364 0.97 7 20 6.7e-05 0.0063 17.8 1.1 1 23 371 394 371 394 0.98 8 20 0.0029 0.27 12.6 6.5 1 23 400 422 400 422 0.96 9 20 1.1e-05 0.001 20.3 0.5 1 23 428 450 428 450 0.96 10 20 2.7 2.5e+02 3.3 0.0 3 21 457 475 456 476 0.90 11 20 0.21 20 6.8 2.0 1 23 517 539 517 539 0.98 12 20 0.018 1.7 10.1 0.3 2 23 567 589 566 589 0.92 13 20 8.7e-05 0.0082 17.4 3.7 2 23 613 634 612 634 0.96 14 20 0.039 3.7 9.0 0.3 2 23 638 659 637 659 0.96 15 20 0.014 1.3 10.5 6.5 1 23 664 687 664 687 0.96 16 20 2.9 2.8e+02 3.2 2.8 2 23 699 721 698 721 0.90 17 20 0.0001 0.0095 17.2 0.3 1 23 727 750 727 750 0.96 18 20 7.5e-07 7.1e-05 23.9 1.7 2 23 755 776 754 776 0.97 19 20 0.00024 0.023 16.0 5.1 1 23 782 804 782 804 0.97 20 20 0.00099 0.094 14.1 2.5 1 23 810 833 810 833 0.96
Sequence Information
- Coding Sequence
- ATGGTGGTATGTGAAAGTAAAGAGAAGATTATAAAAACAATTGTGTACGACATCGATTATAATAACCGGACCATCCAAGGGAGTGACGCCTCAATAATCCTGAAAGATGATGACGGAAGTAAAGTTAAACTAACAATATTGAAGACACCAATCTCGCTAGACGATCTCGTCTGCGAATATGAGACACGAACAAGGAAGAGTAAAATAAAGAATTCGAAACCTAGAATGATCAAGAATGATGATATAAAGAGTTCTGATACTAAAAACAATGTAGATACGTACAATATTACGTTGTTGAAAGAACCGGTAGCGATAGACGTTGATTGGGAGAACGTTGAAGAACGATCTGAAGTAACGTTCAATGTTAAAACCGAGCCCGGATCTTACATTCGTACGCCTCGAAGGAAGAACACTGCTGACTTCCAACTGTGGAAACAAAATGCCTTGACCTTATTCGAGTACTCTTACGTATACCCCTTTATACATGCCGGCAATAAATACAAATGCTTTCTTTGCTCCAGACCGTATCTCAACGCACGTCTCTTAAAAGAACACGTAGTTACAGACCATACCATAAAAGATTTCCAACAGGAGTTGACTAACCGAGTTCGCGACAAAAACATCAAAGTCGATGTAAGCAATTCGAAATGTAAACTATGTTCCGATACTCTACCAAATCTGCAACTCTTGAAAGCGCATTTGAGAGACCACGGCAAGAAAATTGATCCGGACTTCAAGGACAATATAATCCCGTTCAAACTCGATGAAGACACATTCAACTGCCAGATATGTGGTGAGAGCTATCTGAAGTTGCGACTGTTAATCATCCATATGAGTAAACACTTCAATAACTACAGTTGCGAAGTATGCGGTTCGGTATTCGTTTCGCTGAATCTATTGAAGAGGCATCTGGATTCGCATCAATCTGGATCGTATCCCTGCGAGAAATGCGATAAAGTGTTCAGCAATTCGGCGAAAAGGACTATGCATATGCGAGGAGTTCACTTAAAACAACAGCCTCGACGATGCCCTATATGCCCTGAACGGTTCAACTCCAACTACCAGAGGACTAAGCATTTACGAGTCGTACACAATCAAACGACTGGCCTGTATCGCTGCGAGACCTGCGGCCGCGAGTACGACTTGAAGTATCACCTTTTAATCCATATCAGATCGGTGCATTTACAGGAACGCAACCATGAATGTCCGATTTGCCATTCTAGGTTCTTCTCCAAGTATTGCTTGACCAGACATATGGTGATTCATAGTGGGGAGAAGAGTTTCAAATGTGGTGTTTGCGGGAAGTCGTATGCTAGTAACAGGAACTTGAAAGAGCACAGCAAGGCTCATGAGAGTGGAGAGGTGGCCTGTACTATGTGCGGGAGGCAGTGGCGGAATGACGCAGAGCTAGCGGCCCATTTGAGCAGACTGCCGACGAACCGCGGACCCCGAACGAGTATATGGCAAATGACGATATCGGAGCGTCAGAATGCGGCTACATTTATAGAATGCACTACGGTAAAGCCGTTCTTCTACCAGCAAGCCAATTTCAAGTGCTTCTATTGCAACGAAATGTACCCAGAGATACATTCGGTGCTGCAGCACACTTCCACACACGCAACTCCAGACAGGACCGCTCTTTTGAAGCAGCATTTGAGGAAAGGGAAAAGGGTGATCAAGGTCGACATATCGGAGCTAAAATGCAAACTGTGCGAGCAAAAGTATTCCGACCTAGACGATACAAGGAAGCATCTGATAGCGGCACACAAGAAGGAGTTCAATTCCGCTGGCAATGGATTGATGGCGTACGACTTGAGCTCGACAAACGGCACGTTATCCTGTCACAAATGTGATAAAACGTTCAATTCCTTCTTCTTGCTCAACAGTCATATGAATGAGCACTTCAGCGTTGTGTGCGAGACTTGTGGTTTGGGCTTCATGTCGCATCAGAGGTTGATAAACCACAGGATAGTGCACCAACTCGGCGACCACAAGTGCCACAAATGCCAGGAAGTGTTCCCGACGAAATTGAAACTCCGCTACCACATATTCAAGAAGCACGAAGTGACTAACATGAAGAAGATTAGGCCTTTGAAATGTCCTCATTGTTTGGAGAGATTCGCGGAGCATTACAGGAAGATGACGCACTTGAAGGAAGTCCACGGTATCACGTTTTCCTTCGAGTGTCCTGTGTGCAAGACCGTTTTTCCGACTAGAAGGGCGTTGACAGAGCACACGACGAAGCTTCATACGCAGAAGATCCAGTGTAAAGTGTGTGGGAAGTGTTTTGGGACTAGATCGTTGCTCAATATGCATATGAGAGGCCATTCCGGCGAGAGGAACTTCTTCTGCAACATATGCCACAAGGCGTATATGCATGAAAGGACTTTGAGACAGCATATGAGGGTGCATGGGCCTGTATGGAAGTTTTCGTGCTCGGAGTGCGGCAGTGGGTTCCACAATAGGAACGATTACAATAAACACATGAAGCAGTGGCATCCGCAATGGCAATTCAAGACGATTGTTAAGAATTTCGGAACGGAACTTATGAGTTAA
- Protein Sequence
- MVVCESKEKIIKTIVYDIDYNNRTIQGSDASIILKDDDGSKVKLTILKTPISLDDLVCEYETRTRKSKIKNSKPRMIKNDDIKSSDTKNNVDTYNITLLKEPVAIDVDWENVEERSEVTFNVKTEPGSYIRTPRRKNTADFQLWKQNALTLFEYSYVYPFIHAGNKYKCFLCSRPYLNARLLKEHVVTDHTIKDFQQELTNRVRDKNIKVDVSNSKCKLCSDTLPNLQLLKAHLRDHGKKIDPDFKDNIIPFKLDEDTFNCQICGESYLKLRLLIIHMSKHFNNYSCEVCGSVFVSLNLLKRHLDSHQSGSYPCEKCDKVFSNSAKRTMHMRGVHLKQQPRRCPICPERFNSNYQRTKHLRVVHNQTTGLYRCETCGREYDLKYHLLIHIRSVHLQERNHECPICHSRFFSKYCLTRHMVIHSGEKSFKCGVCGKSYASNRNLKEHSKAHESGEVACTMCGRQWRNDAELAAHLSRLPTNRGPRTSIWQMTISERQNAATFIECTTVKPFFYQQANFKCFYCNEMYPEIHSVLQHTSTHATPDRTALLKQHLRKGKRVIKVDISELKCKLCEQKYSDLDDTRKHLIAAHKKEFNSAGNGLMAYDLSSTNGTLSCHKCDKTFNSFFLLNSHMNEHFSVVCETCGLGFMSHQRLINHRIVHQLGDHKCHKCQEVFPTKLKLRYHIFKKHEVTNMKKIRPLKCPHCLERFAEHYRKMTHLKEVHGITFSFECPVCKTVFPTRRALTEHTTKLHTQKIQCKVCGKCFGTRSLLNMHMRGHSGERNFFCNICHKAYMHERTLRQHMRVHGPVWKFSCSECGSGFHNRNDYNKHMKQWHPQWQFKTIVKNFGTELMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -