Badu005457.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026115.1:7719711-7721825[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00031 0.03 15.7 1.3 3 23 280 301 278 301 0.93 2 13 1.1e-07 1.1e-05 26.5 0.9 1 23 307 329 307 329 0.98 3 13 1.3e-05 0.0012 20.1 0.9 1 23 335 358 335 358 0.97 4 13 1.1e-05 0.0011 20.2 0.1 1 23 364 386 364 386 0.98 5 13 9.7e-06 0.00092 20.4 0.9 1 23 392 415 392 415 0.95 6 13 0.00089 0.084 14.2 0.5 3 23 462 483 460 483 0.96 7 13 0.00011 0.01 17.1 1.2 3 23 490 511 488 511 0.97 8 13 1.1e-05 0.001 20.2 0.2 1 23 517 539 517 539 0.97 9 13 0.00011 0.01 17.1 0.7 3 23 547 568 545 568 0.96 10 13 8.2e-06 0.00078 20.6 0.1 1 23 574 596 574 596 0.97 11 13 0.00014 0.013 16.7 0.4 3 23 604 625 602 625 0.96 12 13 1.1e-05 0.0011 20.2 0.1 1 23 631 653 631 653 0.98 13 13 1.8e-05 0.0017 19.5 0.6 1 23 659 682 659 682 0.95
Sequence Information
- Coding Sequence
- ATGGAGGGAACAGAGGGACTACGCACGTGCCGGGCGTGCTTGACTACAGACTGCGAGTTACACGAACTCGAGGAAAATGGACTGTTGGAGAAGTTTCAGCAAGTGACATCGTTGCGGCTTTGTCCAATTGATGGTATGCCGATGCACATTTGCAGTTTTTGCCGTGCTCTCCTGATAAAGACCTACAACTTTCGTATTAAGTGTATAGAGTCAGATAAAATTATAATAGACAAGGCTGGGAGCCTAAACTGTATCCGCCGTGTGAAGGAAGTTGGTACAATGCATGAACTGAGTCTAACAGACGTGTTGGTTGTTGCATTTAATGGAAAAAGTAAATGTGCCGAGGATATTCAACGGGATAATAAAAGGGATCAACTAGATTGTCATGAAGTAGTTGCTATGGAACATAATGTAGTAGTTAAAAAAGAACATGTCAAGATAGATAATTTGCAAAATGTTGACTATTTCGTAGATGAACCTATCCAATGTGACAATACAAATACATCAAATCATATGCACTGTGATGAAATCATATTAGGCATGGCTTTTGATCCGACAATGGCAATACAAACAGATTGTAATATTAAAGATGAATTATTTGAAATTTCACCTGAAATAGAATTTGATGAAAGTTTCGGTTCAGAGTCACATGAAGCAATTAGTGAAGAGACAATTTGTAATACGCAAGTAGATCTTTTGAAAAATATCAAGGAAGACATCAACGCAATTGATATTGAAAGTGCCCCTAACAGTGAACAAAAAATATCAACTATATTAAAAGAGGATATGAAAACACTAAAATATTTAGCTAATATAAATGAGAGTGATCTCTTTGGTTGTGACATCTGTGGCAAGATGTTTAAGACTAAGTGTTCTGTCCGCTCCCATATAACAGGGGTACACATAGAGGTGCGACTGTATCCTTGTGAGCAGTGCGGCAAGGCTTTCAAACATCCAAGGAATTTAAAGATTCACCAACAGGTGCATACAGCCAAACGTGCATTTCGTTGTGAAATTTGCGACAAGATGTTCAAGTTTAAGGCAGAAGTCGAGAAGCATACTAGACAGATACATAATGAAGAGCGGCCATATCCCTGTGCGCAGTGTGGCAAGGCCTTCAAACTTCTAGGCAGCTTGAAAGTGCACCAACGGTTGCATACAGGTGAACGTGTGTTTGATTGTGACATCTGCGGCAAGACATTCAAATATAAGTCAGGTATCCGGAAGCATACTATAAAGGTACACAGCGAGGTACGGCAAGATGTTAACGCAATCGATATTGAAAGTGCCATTAACAGTAAACAAAAAATATCAACTATTTTAAAAGGGGACACGGATACACTAAAATATGTAGCTAGTATAAATGAGACTAATCCCTTTGGTTGTGACACCTGCGGCAAAATGTTTAAGGCTAAGCGCTCTGTCCGGAACCACATTATAAGGGAACACAGCGAACGTGCCTTCGGTTGTGACATTTGCGGCAAAATGTTCAAGCTTAAGACATATGTCCGGAAGCATACTAGACGGGTACATAGCGTGGTGCGGCCTTATCCCTGCGCGCAGTGCGGCAAGGCCTTCAAATTGCCAGGCCACTTAAAGGCTCACAAACTGGTTCATACAGGCAAACGTGCCTATGGTTGTGACATCTGCGGCAAAATGTTCAAGTTTAAGAGAGATGTTCAGCAGCATACTAGACAGGTACATAGCGTGGTGCGGCCTTATCCCTGCGCGCAGTGCGGCAAGGCCTTCAAATTTCCAGGCGACTTAAAGACTCACCAAGTGGTTCATACAGACGAACGTGCATTTGGTTGTGAAATTTGCGACAAGATGTTCAAGTTTAAGGCAGAAGTCGAGAAGCATACTAGACAGGTACATAATGAAGAGCGGCCATATCCCTGTGCGCAGTGTGACAAGGCCTTTAAACTTCTAGGCAGCTTGAAAGTGCACCAACGGGTGCATACAGGTGAACGTGCGTTTGATTGTGACATCTGCGGCAAGACGTTCAAATATAAGTCAGGTATCCGGCAGCATACTATAAAGGCACATAGCGAGGTGCGGCAAGATGTTAACGCAATCGATATTGAAAGTGCCATTAACAGTAAACAAAAAATATAA
- Protein Sequence
- MEGTEGLRTCRACLTTDCELHELEENGLLEKFQQVTSLRLCPIDGMPMHICSFCRALLIKTYNFRIKCIESDKIIIDKAGSLNCIRRVKEVGTMHELSLTDVLVVAFNGKSKCAEDIQRDNKRDQLDCHEVVAMEHNVVVKKEHVKIDNLQNVDYFVDEPIQCDNTNTSNHMHCDEIILGMAFDPTMAIQTDCNIKDELFEISPEIEFDESFGSESHEAISEETICNTQVDLLKNIKEDINAIDIESAPNSEQKISTILKEDMKTLKYLANINESDLFGCDICGKMFKTKCSVRSHITGVHIEVRLYPCEQCGKAFKHPRNLKIHQQVHTAKRAFRCEICDKMFKFKAEVEKHTRQIHNEERPYPCAQCGKAFKLLGSLKVHQRLHTGERVFDCDICGKTFKYKSGIRKHTIKVHSEVRQDVNAIDIESAINSKQKISTILKGDTDTLKYVASINETNPFGCDTCGKMFKAKRSVRNHIIREHSERAFGCDICGKMFKLKTYVRKHTRRVHSVVRPYPCAQCGKAFKLPGHLKAHKLVHTGKRAYGCDICGKMFKFKRDVQQHTRQVHSVVRPYPCAQCGKAFKFPGDLKTHQVVHTDERAFGCEICDKMFKFKAEVEKHTRQVHNEERPYPCAQCDKAFKLLGSLKVHQRVHTGERAFDCDICGKTFKYKSGIRQHTIKAHSEVRQDVNAIDIESAINSKQKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -