Badu030127.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blastobasis adustella
Gene Symbol
-
Assembly
GCA_907269095.1
Location
OU026129.1:734561-736921[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.5e-07 7.1e-05 23.9 0.5 1 23 352 375 352 375 0.98
2 15 0.00011 0.011 17.1 1.0 1 23 381 403 381 403 0.94
3 15 3.5e-07 3.3e-05 24.9 1.7 1 23 409 432 409 432 0.97
4 15 9.7e-06 0.00092 20.4 0.1 1 23 438 461 438 461 0.97
5 15 6.4e-05 0.0061 17.8 0.3 3 23 470 491 468 491 0.97
6 15 0.0088 0.84 11.1 6.2 1 23 497 520 497 521 0.94
7 15 2.9e-06 0.00027 22.1 0.4 1 23 527 550 527 550 0.97
8 15 0.001 0.099 14.0 0.1 1 23 556 579 556 579 0.96
9 15 0.0016 0.15 13.4 0.0 3 23 587 608 585 608 0.94
10 15 8.6e-06 0.00082 20.6 0.1 1 23 614 637 614 637 0.97
11 15 7.7e-05 0.0073 17.6 0.7 3 23 645 666 643 666 0.96
12 15 0.00037 0.035 15.4 0.1 1 23 672 695 672 695 0.97
13 15 4.8e-05 0.0045 18.2 1.2 1 23 701 724 701 724 0.96
14 15 8.7e-06 0.00082 20.6 0.3 1 23 730 752 730 752 0.98
15 15 8.2e-06 0.00077 20.6 2.0 1 23 758 781 758 781 0.94

Sequence Information

Coding Sequence
ATGCAGCAAACAGAGGAACTGCGCGCGTGCCGGGCGTGTATGGCTACGAACTGCGAGTTACACGAACTCGAGGAAAATGGACTTGCCGAGAAGTTTCATCAAGTGACATCGTTGAGGCTTTGTACAATTAATGGCATGCCAAAGTATATTTGCAGTTTCTGCCGCGCTCTGCTGGTAAAGGCCTATCGGTTCCGCTTAAAATGTTTGGAGACGGATAAAACTATGTCACAAAATGCTGTAGGCCAGAATATACGCCTCGAAAAGAAAGCCTACTGGTGGCATGAATTGAGCATATCAGAAAGGCTGGTCGTTTCATGTGGTGGAGTAAATGAATGTGTCAAGAATGAAGATGATGTAGCAGTTAAAGAAGAACCGGCAGAGATAGAACATTTGCAACATGTTGATGGATACATCATAAATGAACCTGTCAAAGCTGTAGACATCAAATACAACGACCAAGTAATTTCAAATGATGAGAGTAATAAATCAAATGCATCAAATCATGCACATCGTGGTGTAAATAGATTTACCATGGCTGTTGATCCGGCAGGGCTAATACAATTAGAATGTCATATTAAATGCGAGGTTTTGTCTAACGATGAGCTTAACGGAAATTTTATACAATCCAATGACTCACATGAAGCGTTTAATGAAGATGCAATCCATAATATAGAAGCACATTCTTTGGAAAGAGTTGAAGAGGACGTCAATGCAATCAATATCCATAACATAGAAGAGATAATCCACTATACACAAGTAGATTTTTTGGACGAAGTTCAAGAAGATGGTAATGCAATAGAAATCCATGACATCAATGAGTGTTTTTATGAAGAGACAGTCCACAATACAGAAGTAGATCTTTTGACAAATGTTGAAGAAGATGTCAATGCAACAGTTATTAAAGAAAGTGCCATTAGCTGTAAACGCAAAGTATCAAGTATTTTCGAAGGGAACACAATGAAAAGACTAAAATCTGTAGCTGCTTTGAATGAGAGTGATATAACTAAAAGAAACGTCTGCAAGAAAGTATCAGTAGATATAGGCAAAAGTCCCTTTAGTTGTGACATTTGTGGCAAGATGTTTAAGACTCAGACCACTATTCAGGCCCATATTAGAAAAGTACACAGCGAGGCACCACCTTATTCCTGCGCGCAGTGTAACAAGGCATTCAAATTTCCATACTTGTTAAAGAGACACAATGTGATGCATACAGGCAAACTTAGCTTTGAATGTGACATCTGCGGCAAGATGTTCAAGAGGAAGAGCAACATCCAGATGCATATTAGGCACGTACACAGCGAGGCGCGGCCTTATCCCTGCCCGCTGTGCGGCAAGGTCTTTAAATCGACCGGGAATGTAATGGATCACCAACTGCGGGTACATAATATAAACAATGGTTCCTTCGGTTGTGACATCTGCGGTAAGATGTTCAAAACGGAGACTAAAATGCAGGTCCATATTACAACGGTACATAGCAAGGGACGCTCTTATCTATGCAAGCAGTGCGGCAAGGGCTTCAGACTGCTGTGCCACTTAAAGGAACACCAACTGGTATTCCACCATAGAGTCGAACGTCCCTTCACTTGTGACATCTGCGGCAAGATGTTCAAGAGTAAGAACGGGGTCCAGGTCCATATTAGGCAGCTACACAGTGAGGCGCAGGCTTTTCCCTGCTCACAGTGCGGTGAGGTCTTCAAATGGCTGAGCAAGTTAATGGTTCACCAAAAACTGGTACATACCGTTGAACGCCCCTTCGGTTGTGACATCTGCGGCGAGGTGTTCCAGAGTAAGGACGAGGTCCAGATCCATATTACTCAGGTACACAGCGAGGCGTGGCCTTATCCGTGCGCGGAGTGCGGCAAGGTCTTCAAATTGCCGAACATGTTAATGGCTCACCAAAAACGGATGCATATGGGCGGACGTCTCTTCGGTTGTGAAAACTGCGGCAAGATGTTCAAGAGTAACACTAAGCTCCAGCTCCATGCTAGGCAGGTACACAGCGAGGCGCGGCCTTATCCCTGCGCGCAGTGTGGCAAGGCCTTTAAATTGCCGAACGTCTTAATTGAACACCAGAAACGGGTGCATACAGGCGACCGTCTATTCTGTTGTGACATCTGCGGCAAGATGTTCAAGGCTAAGGGCGATGTCAAGGTCCATATTAGGCAGACACACAGCAAGGCGCGGCCTTATTCCTGCGAGCAGTGCGGAAAGGCCTTCAAAACGGCGTACGTCTTAAAGGGGCACCAACAGGTGCATACAGACGTACGTCCCTTCAGTTGTGACATCTGCGGCAAGATGTTCAAAAATAAGAAAACTATGCAGAAACATACTTTGCAGCTACACAGTGAGGCGCAACCTTAG
Protein Sequence
MQQTEELRACRACMATNCELHELEENGLAEKFHQVTSLRLCTINGMPKYICSFCRALLVKAYRFRLKCLETDKTMSQNAVGQNIRLEKKAYWWHELSISERLVVSCGGVNECVKNEDDVAVKEEPAEIEHLQHVDGYIINEPVKAVDIKYNDQVISNDESNKSNASNHAHRGVNRFTMAVDPAGLIQLECHIKCEVLSNDELNGNFIQSNDSHEAFNEDAIHNIEAHSLERVEEDVNAINIHNIEEIIHYTQVDFLDEVQEDGNAIEIHDINECFYEETVHNTEVDLLTNVEEDVNATVIKESAISCKRKVSSIFEGNTMKRLKSVAALNESDITKRNVCKKVSVDIGKSPFSCDICGKMFKTQTTIQAHIRKVHSEAPPYSCAQCNKAFKFPYLLKRHNVMHTGKLSFECDICGKMFKRKSNIQMHIRHVHSEARPYPCPLCGKVFKSTGNVMDHQLRVHNINNGSFGCDICGKMFKTETKMQVHITTVHSKGRSYLCKQCGKGFRLLCHLKEHQLVFHHRVERPFTCDICGKMFKSKNGVQVHIRQLHSEAQAFPCSQCGEVFKWLSKLMVHQKLVHTVERPFGCDICGEVFQSKDEVQIHITQVHSEAWPYPCAECGKVFKLPNMLMAHQKRMHMGGRLFGCENCGKMFKSNTKLQLHARQVHSEARPYPCAQCGKAFKLPNVLIEHQKRVHTGDRLFCCDICGKMFKAKGDVKVHIRQTHSKARPYSCEQCGKAFKTAYVLKGHQQVHTDVRPFSCDICGKMFKNKKTMQKHTLQLHSEAQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-