Bstr022851.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- RTase
- Assembly
- GCA_950106695.1
- Location
- OX467121.1:5302519-5323347[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.19 14 6.9 2.4 1 23 1229 1252 1229 1252 0.95 2 8 1.2 84 4.4 4.0 1 23 1282 1304 1282 1304 0.97 3 8 0.07 5.1 8.2 1.7 1 23 1309 1332 1309 1332 0.93 4 8 0.016 1.2 10.3 0.0 2 21 1338 1357 1338 1358 0.93 5 8 0.00037 0.027 15.4 0.0 1 23 1800 1822 1800 1822 0.96 6 8 0.00065 0.047 14.6 0.6 1 23 1828 1850 1828 1850 0.95 7 8 6e-07 4.4e-05 24.2 3.4 2 23 1856 1877 1855 1877 0.97 8 8 0.0036 0.26 12.3 0.0 2 23 1884 1906 1883 1906 0.94
Sequence Information
- Coding Sequence
- ATGGGAGATTTCAATGCACACCATACATCCTGGGGCTCCCATCATTGTGACCATTTTGGCCGCTTACTGTTTGAAGCATTCGAGGAAGTAAATTTATGTATAGGAAATGATGGCTCTCCTACTCGAAGGGTCTTACCCTTTCAAAATCCCAAATCTGCTGTTGACCTGACACTATGTTCTCCTGGTCTACTTCCTTCTCTATCTTGGCAGGTCCTTCCTCTCAGCAGAGGGAGCGACCATTTTCCCATTCTAGCAAGATTAGGGTTTAGAGTTTCCCAACCTTCTCCCCCAATCCCTCTTTTAAAGTACAGGCTGACTGGAGCTAAATGGGATTTATACTCTTCTCTCCTCGATCTAAAATTTACATCTATTCCCAATCCTGCTGAAGAAAATCCTTTagcttgctactcaaagttagtGGAGGCAATTATATCCTCGGCGGATGAATCTATTCCTCTCAAAAATCCTAGAAACAACCTTTTCTCCCCTCCTTGGTGGGATTCTGAATGCACAAAATTGATTCGTGAGCGTAACTCTGCAGAAAGAGATTATAATAACTGCATGTCCTTCGAATATTACCTCATCTTCCAAAAAACATCTGCAAAATGTAGAAAAACTCTAGCATCTAAAAAGAAACTTGGCTGGACAACATTTTGTGAAAGTCTATCTCCAATAACTCCACCTTCAGTTGTTTGGAAACAGATCCGCAGGTATAGGGGTTCTTGTAACTCAGATAACCCTACCTCTCATGATCCATATTCTTGGTTAGAAGCATTTGCTGATAAGTTAGCTCCCCCTTATGTCCGTCAGAATCCTAACTTAATCACCCCAACCTATTCCCTTAACTCCTCCCATTTTGACCCCCCTTTCTCGTTTGATGAACTGCAGTTGGCTCTTAATGGACGGACTGACTCCTGCCCGGGCGTTGATGGAATTCCCTACTCCTTCATTATCAGAgcaaatgaaaatgtcaaacGATATTTCCTTaacctaataaatatattttttgagcaGGGTTTTATCCCTGATTCCTGGAAAACCCAAGTAGTGGTTCCTATTCTTAAACCGGCTAAAGATCCTTCAGATCCTAATTCTCGTCGCCCAATTGCTCTCTCCTGTGTGGCAGCCAAAATTACTGAAATCctaattaaaaatagattagaGTGGTTTGTAGAAAACCATAGACTACTTCCCGACTCACAGTTCGGCTTTAGGAAAGGAATGAGCACGTCAGATAGCCTCAGCATACTAACTACGGACATCCGCATcggtatgaaaaataaaaaatatgttgtggCTGTGTTCCTAGATGTTGCCTCAGCTTATGACAACGTCCTTCTTCCGACTCTCAGAAACAAAATGTTGCAGCTGAGTATCTCGGCAAAGATGGTTCGATTCATTAGCTGTTTTTTGATGGAAAGAACTATTCTCATCAGAAATCAAACCTCAACTCCAACATCTAGGGTAGTATGGAGGGGCCTTCCCCAAGGTTCAGTCCTTAGCCCTCCCTTATATAGCTTATATACCGCTGACTTGGATCTTGTTGTTAGTCCCTTCTGTCAAATTCTACAGTATGCCGATGATGTTGCACTTTATGTTATTAGTGAATCTATTGAGGAAGCTGAATCACTATTGAACCCCGCTCTAGTCTACTTAGAAGACTATTTGAACAATAATGGATTGTCTATCTCTGTTGCCAAGAGTAATGCGATTGTATTCACAAACAAAAGAACTATTCCCAACGtgcaattaaaatgtaataatgaaCCCATTCCACAGAAAAGCTCTGTTAAATTCTTAGGTTTATGGCTCGATACAAAACTAACAGGTGTTCCTCATTCTGAATATGTAGCTACTAAATGTGAAAAGAATATGAATATTCTTCGCTCCCTTTCTGGCGTATGGTGGGGCTCTCATCCATTttctcaaaaaatattatacaactcCATAATTCGTTGTCACTTTGACTATGGAGCATTCCTGCTAGAACCTGGTAATAAATCTGCGCTGAAAAAACTGTCTGTAATTCAATCGAAATGTCTACGCATTATCCTAGGTGCCATGAAATGTTCTCCTACTAATGCTATCCAACTAGAATGTGGAGACCCTCCTTTATACTTACGAAGACAATTTCTTGCTGATCGATTTTACACTAAAATGGTTCAGAACTCAGACCACCCCCTTTGGCAAAAAATACAAGACTTACATAGACTCACCCCCCCTCAtgatatcaaatttcaaatcaatctgCCCTGCATTCTTCGCAGCCACGTAAAATTTTCCCAACTACCCTTTCCTATTGCAAGTTTTCCAATTAACCCCCTATTCTCCACTAATTATAGTGCGTTAACCTACCAACCCTCTGTCATTCTCAACTTGGGTATTGATAAGAATTCAGTAGAACCAAGTAAAACTTTCCTTGAAATCATTGACACCAATTGGAAAGACTGGCTAACAGTATTTACCGACGCCTCCAAATTGAATCAAGATAGTGATGTAGGAGCTGCAGTCTGGATCCCTAAATATAGTATTGTTTTAAGCAACAAGTGCCCACCAATAGCTTCAGTTTTTACCGGCGAAGCGATAGCCATACTTGAAGCAATACAATATGTTACCTCCCATTCTATTAGCAAATGCATTATTCTGTCTGATTCTAAAAGTTCTCTTCAAGCTATCCTGGCCAaccaatttaaaactaaaaataaatacccaataatactcaaaattaaagaAGAACTATTAAAATCACACAACCTAGGTTTACAGATAGTACTAGCCTGGGTACCTGGTCATTCAGGCATCCCAGGCAATGAAAATGCAGACTATTATGCGAAGCAAGCCACTATTTCCGGTAACAAAGACCACTTCAAAGTCTATTCACATGATCTTTCTTCTATGTGCCAACCTCAACTATTTGATAACTGGAATGCTGCCTGGCAGGGATCTAAAATACTTACTGGCAAATTTTATGGCCAAATCCAACAAACAGTGCCCTTAAAACCCTGGTTTttcaaatttaagaaaattgataaaaaagtaATCTCTACCATTTGTCGTCTGCGGTTGGGTTTCGCCTGCACCCCGGTGTTCCTTAAGAAGATAAGAGTGCGCGACCACTCGCTTTGTGAGTGTGGGCTGGCTGAAGGTACAACAGACCACATTTTCTTCGAATGTCGTAGATATCGAGGCTCCCTTTACGATATGATCCCAAATGACCTTCCACTCCCTATTAACTTTTCCAACCTCCTACCCCTGgTAGTCACCATGCCTTCGTTTTCTTACTACTGCAGCGAGTGTGAATatcttttaacaaaattttacaaattcaaaCAGAAATGTGTGAAGGCATTGGAGGCTTATCAAAAGTGGGTGGAAGCTGGTACAAGTAAAAAACTGTCAGTAAGACTTCTCTATACAATGCTCCCGCCACCAACCCTTGGTATGTGGACACAGAACCCGGATAAAGTTGTCAACATTGACGTAAAAGTGACGGATTCAGATACAGACATGCAAATTGAAGAGGTGGTTAAGATAAAGATAGCTAGAAAAAAGGTTTATGACAGAATCGAAGAAAGCGATAAACAGTATGAGTCAGTATTCGATATAGAGTATCTAACAACACACGAGAAGAAATTGGAAGAATTCGAAAAAAGGAAGACATATGAGTGTTATATTAATGCTAAGCACAAATGCGAAATTTGCTACCAAGTGGTCAAGAGTTCCAAATTTTTGCAGTATCACACTGACAAATGGCATACGgAAAGTCCTGATAAAAACCTGTGCCCATATTGTAAGACGTGGAACTCTAAAGGGAGCAAACATAAAAGTCACCATTTTGCCGTGTTCAAATGCAAGCTCTGTCCGCTCATCACTTACCATAGAACTTCGATGCAGAATCACTTCCAGCAGCACAAAGGCAAGCGGTATCATTGTGAACCTTGCAACTTCACATACAAGAGTAAATCCGCATACAACAACCACATAGGCAAAGCACACCGACGAGGACGAAACGTTTGCGAGGGTTGTGGACGAGGATTCAATTCGCCTGTGGGACTGGCGATACACAAGAAGAACTCTGCTCGCTGCACTGCGGCGCAAGAGGGCGCTTCCTCGATGGAAACAGAGGGCGTACGATGCGCCGAGTGTGACGTCACGCTACCCTCTCAACAGGTGTACGAAGCACATGTTGCAGATGTCCACGAACCGAGACGAAATAACGGACGGCCTCTCGCCAAAAACAGCGCTGGCATACCTGAATCTAGAGTTGAATACACGGTATCATGGGTTTATTGGAGGAACAAAAACAAACCGCTATTATGTGTAGCACATCAACATCTTAAAGATACACCCATTCATTCAACTACACAGTTAGGAATGTTTTCATTAGACACGTGGATCAGCAATGTGGATGTTTCAAAGGTACTAGCACCCAATATGGATACCTTACTTGGACCAAAACATAAATACCAAAACACTGAATTGAAGCACTTAACTGAGCAGTATTTAAACAGCAACTATGCAGAGTTTTATAAGATATATACAGATGGGTCCAAAGAAGGAATAAATAGTGGAGCAGATATTTTTGACCCTCAGACAAATAAagcaatacaaataaacattaatgtCAACATATCTATTATGTATACCGAGCTCATAGCCATAGCGGAAGCCATTGCGTATGCACATACAATCCAAGCTGAGAAGTATGTCATTTTGTCAGATTCCAAAAGTGCCATTTACCATCTGGCTCGGTGCACCTCGAATAGTCGAGGCTCCCCGATAGCCTACCGCATTTTGGAGTCTATACACAACACGGCCAATATAAATAAGTTGTTTAAGATCCAATGGTTACCCTCACACGTCGGCATACCCGGCAATGAAGAGGCCGATCGCCTCGCCAGGGATGCTTTACTCCACGGGACACCCTTCGTTTGCTTGCCTCTTTTCTCTGACTGTTTAGGTATGGTCAGAGTTAGAGCTAGGGAGTTGTGGAGGGAGCATTTTGACGAGCGCTCGGTATCAAAAGGTGTTTGGTACAAAACGATACAACCAAATCTGAGGCGCTCTGCATGGTTTGCCGGTGCAGATATGAGTAGGGCGGATATTGTAACGGCCATGAGGCTTCGGTCCGGTCACATTCCGCTCAATAGATTCCTACACCTGATGGGTAAGTCCGACACGCCAAACTGCACGGAGTGCGGGGTGGTCGAAGACGCATATCATGTTGTGGCCGAGTGTGTTCGAACCGAAGCTGAGAGAtctgatttctttttaaaaaccgACCTCAACTTGAGGGATTGCAATAAAGTGGGAGTGAGTTTCGGCTGGTTACACCTACATTTCAAGAGAGAGCATCCCAATGAAGATCTGAACTCCTTGTATGCGGACAAGAAGACTTATCTGTGTGACGTGTGCGGTGCTGTGTTTAGTAATATTTACGCTCTCCGCACACATGTGAACATACACACGGGGGAGCGTCCATACGCGTGTGACGTCTGTCCGAAGCGGTTTCGCAGCTCCAACCTGATGAAGGAGCACCGGGTGAGGCACTTCCCCTCCACCGTCAGCTGCTCCTACTGCGGGAAGCGCTTCAAGACTAAAGGGAACCTCTGCACACATATGAAGGTGCACACCGGCGAAAAGAACAACAAATGCGAGATCTGCGGCAAAGCGTTCTTATATCTAGCGAACTTGAACGCTCACGTGCAGGGGGTGCATTTCAATATAAGGCGCGTTAGAAGGGGGGGCAATCGGGAGTCCTCAGGCACGGGGACGCCCCCTAAGAGGGGCAAAAGGATATACGCTGATACTGAAACAGATCATTCAGGGGATAATAGcgaatga
- Protein Sequence
- MGDFNAHHTSWGSHHCDHFGRLLFEAFEEVNLCIGNDGSPTRRVLPFQNPKSAVDLTLCSPGLLPSLSWQVLPLSRGSDHFPILARLGFRVSQPSPPIPLLKYRLTGAKWDLYSSLLDLKFTSIPNPAEENPLACYSKLVEAIISSADESIPLKNPRNNLFSPPWWDSECTKLIRERNSAERDYNNCMSFEYYLIFQKTSAKCRKTLASKKKLGWTTFCESLSPITPPSVVWKQIRRYRGSCNSDNPTSHDPYSWLEAFADKLAPPYVRQNPNLITPTYSLNSSHFDPPFSFDELQLALNGRTDSCPGVDGIPYSFIIRANENVKRYFLNLINIFFEQGFIPDSWKTQVVVPILKPAKDPSDPNSRRPIALSCVAAKITEILIKNRLEWFVENHRLLPDSQFGFRKGMSTSDSLSILTTDIRIGMKNKKYVVAVFLDVASAYDNVLLPTLRNKMLQLSISAKMVRFISCFLMERTILIRNQTSTPTSRVVWRGLPQGSVLSPPLYSLYTADLDLVVSPFCQILQYADDVALYVISESIEEAESLLNPALVYLEDYLNNNGLSISVAKSNAIVFTNKRTIPNVQLKCNNEPIPQKSSVKFLGLWLDTKLTGVPHSEYVATKCEKNMNILRSLSGVWWGSHPFSQKILYNSIIRCHFDYGAFLLEPGNKSALKKLSVIQSKCLRIILGAMKCSPTNAIQLECGDPPLYLRRQFLADRFYTKMVQNSDHPLWQKIQDLHRLTPPHDIKFQINLPCILRSHVKFSQLPFPIASFPINPLFSTNYSALTYQPSVILNLGIDKNSVEPSKTFLEIIDTNWKDWLTVFTDASKLNQDSDVGAAVWIPKYSIVLSNKCPPIASVFTGEAIAILEAIQYVTSHSISKCIILSDSKSSLQAILANQFKTKNKYPIILKIKEELLKSHNLGLQIVLAWVPGHSGIPGNENADYYAKQATISGNKDHFKVYSHDLSSMCQPQLFDNWNAAWQGSKILTGKFYGQIQQTVPLKPWFFKFKKIDKKVISTICRLRLGFACTPVFLKKIRVRDHSLCECGLAEGTTDHIFFECRRYRGSLYDMIPNDLPLPINFSNLLPLVVTMPSFSYYCSECEYLLTKFYKFKQKCVKALEAYQKWVEAGTSKKLSVRLLYTMLPPPTLGMWTQNPDKVVNIDVKVTDSDTDMQIEEVVKIKIARKKVYDRIEESDKQYESVFDIEYLTTHEKKLEEFEKRKTYECYINAKHKCEICYQVVKSSKFLQYHTDKWHTESPDKNLCPYCKTWNSKGSKHKSHHFAVFKCKLCPLITYHRTSMQNHFQQHKGKRYHCEPCNFTYKSKSAYNNHIGKAHRRGRNVCEGCGRGFNSPVGLAIHKKNSARCTAAQEGASSMETEGVRCAECDVTLPSQQVYEAHVADVHEPRRNNGRPLAKNSAGIPESRVEYTVSWVYWRNKNKPLLCVAHQHLKDTPIHSTTQLGMFSLDTWISNVDVSKVLAPNMDTLLGPKHKYQNTELKHLTEQYLNSNYAEFYKIYTDGSKEGINSGADIFDPQTNKAIQININVNISIMYTELIAIAEAIAYAHTIQAEKYVILSDSKSAIYHLARCTSNSRGSPIAYRILESIHNTANINKLFKIQWLPSHVGIPGNEEADRLARDALLHGTPFVCLPLFSDCLGMVRVRARELWREHFDERSVSKGVWYKTIQPNLRRSAWFAGADMSRADIVTAMRLRSGHIPLNRFLHLMGKSDTPNCTECGVVEDAYHVVAECVRTEAERSDFFLKTDLNLRDCNKVGVSFGWLHLHFKREHPNEDLNSLYADKKTYLCDVCGAVFSNIYALRTHVNIHTGERPYACDVCPKRFRSSNLMKEHRVRHFPSTVSCSYCGKRFKTKGNLCTHMKVHTGEKNNKCEICGKAFLYLANLNAHVQGVHFNIRRVRRGGNRESSGTGTPPKRGKRIYADTETDHSGDNSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -