Bstr004121.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- PGBD4
- Assembly
- GCA_950106695.1
- Location
- OX467107.1:37146852-37187652[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.43 31 5.7 0.3 2 23 435 456 434 456 0.95 2 13 0.0078 0.57 11.2 0.0 1 23 466 489 466 489 0.95 3 13 0.24 18 6.5 0.6 1 23 1273 1296 1273 1296 0.90 4 13 9.1e-05 0.0067 17.3 1.6 2 23 1303 1326 1302 1326 0.96 5 13 0.0027 0.19 12.7 0.5 1 23 1332 1354 1332 1354 0.95 6 13 0.013 0.93 10.6 1.8 1 23 1360 1382 1360 1382 0.98 7 13 2.6 1.9e+02 3.3 0.3 3 19 1394 1410 1393 1413 0.88 8 13 0.4 29 5.9 0.3 1 23 1492 1514 1492 1514 0.98 9 13 3 2.2e+02 3.1 7.2 1 23 1521 1543 1521 1543 0.95 10 13 0.002 0.15 13.1 1.8 1 23 1564 1587 1564 1587 0.95 11 13 0.001 0.073 14.0 2.6 1 23 1594 1617 1594 1617 0.97 12 13 0.014 1 10.4 0.2 2 23 1635 1657 1634 1657 0.95 13 13 0.073 5.3 8.2 1.0 3 23 1693 1713 1691 1714 0.92
Sequence Information
- Coding Sequence
- atGCCAATTAGGTATTTGGTGCGTGAGGTAGTGCAACGCACAACCAGTTCCGGCTTGTTCCTAGTGCAAAGGTCTGTCCTAGGGTACGACATCGATCTAGCATCCTTAACCAAAGACCAACCGGTAGACTTAAACGGGAACGTGTATCAATTTCTTCTAAACCTTGAACGCGACCATCCAGATATGGTTCAAATATTAGACCAAAATGAACCCAGCGATAATCAAGAATACGTTTTAGACGATGGCACTGAAATTCGAGCTTCTCAAATACATTTCGACAACGAAGACGCACCGATCGATCTAACACTTGAAAAATTACCGTTTGTCAAAGTAAATGATGATGTAGAAGATGAAATAGTAGAAGGGTTTTATGAAGATGTCTTATTTACAATCACGGCTAGTCCTATAGGTAGTTTGCTAGCCAgtccaaaacaaaatccaatcaATGGAGTTCCTTTTAAACTAGTTTGTAATAACACAACTGGTTTCGAAGCCCAGTTTACAAGATATCTAGAGGAGAACACAAAAACATACGCAACTCTAAATAATGTTACTAAAAAGAATAAATCACCAAGAAGTCTTATCAAAGATAACTTTAATAGTAAAGAAGAATTCAGATATACTAGAGAAGAGATATTGAATATGCTCAAAGATTCACCAGTCACGAGTATTCCGTATGAAGTGAATGAAAAGAAACATGTGAGAAAGACTGATCCTACCAGAATGATTCAGAAAAGTACAGCAAAGACTTTAGACATAGATGGACTTGTGATAGCAGATGAGGACAATAGAAGCTGTTTTATCTGTGACAATAGTGTCATTGACAAACTATATATTTTCGACAAAGAAGATCAAAAATTACATAGATGTTCACCGCAGAAGATTGTTTCAACTCAACTGAAAGTTATATGCGATCTTTGCCTCAATGAAAACTTTCGACCGTCAAGAATGAAAGGAGCCAACCAGTTCTTGAATTCAGGAGAATATCTAGTGATAAAGAATAACCAGCAGTATATATTTCAGaagataaaaagttttaaagaagTGAAGAAAATTAAGAATAAAGATGAGTTTGTTAAAGTTGAGATTGGATCTGACGGGGAGATAGTTACGAAACCTATAGACAACGATGATgacgtaataattataaatgatgATAGGAAGGATAGTTGCAGTGACGTGAAGTTGATAGAAGGGGAACCGGAAATAGATAAGATTATTGACAATTTGGAGGAAGCGGACGAAGAAGTAAAGCAATTTTTGGGAACATATGAACATAATGCTGGTGAAGCTAAAGAATTGAAATGCAGATTTTGCGAGCAAGTTTTTCAGTCTACATCTGAAGTGGCGTCTCATGGTGAGACACACAAACATGATACGGAAGAAGAAATAGTATTCCCGTGTCCACTATGTGATTATGGTTACGCCAATTTCAAGTGGCTAAAAGGTCACATAAAAGCTGCACATGAGAAGAACGAGAAAGGACATAGAGACGCAACAgagaaagCATCACGATGCGTTCACACAAAAGAGCTTAAAGAGAGCAGTACCAACGTGGCCGAGCCCCGCATCCCGAaacaAACCAATATCTTGGAGGGATCTTCTGGCAGTACATTTGGTGTTACCGTGGAATCTGTCCGGCTAGATACCACCCCGGGAGGACACCTGgaCACCAGTTTGGAAGAGCGGATAGACGCCATAGATGTTAGCGACGATGATGTGGAGCAGGGGGCTGCAGCGGAACAGATCCATCGTTTGGTATGCCTGCAACCTGAGCCGCTTGCGTCTAGCTCTACTGCTGCCGAAAACATAGGCGATGCTTCGGGCAATGACTGTTCCCAGTCTGTCATGCAGACGGGGAGCGTGGCAGATGGTACTGCAGCAGATGCCGGTGTTCGTCCGTCAACCTCGGGTGTAAGACCTAGGCAAGTCGCTAGGAGCAAGATAAACAAGGACAGTGATATAGAAAGTGACTCCGACGACGAGTGTAACGTAAGTTCTTTAGAGACCACTGGCCTTGCCGGAGTAGGAAGGGACATCCCGGACAACGATGAGCTAGACGAACGCGAGGGAAATATTGTAGCTTCTGTAGAGAGTGCGATGGATGAAGCAGCGGATGGTTTGCTCGGTATTTCTCACAGTTTCACGTGGGAAGAAGACTTTGAGTCGTTCCGCAGTGTTCCTGAAGAATTTAAGGGTCCTATTGCAGGACCACTCAAAGATTATGATTCGCCCTATGATGCCTTTATTGATATCTGGGATAAGGACATCATGGAGCTAATCGCCCTTGAAACTAACAGGTATGCTAAGCAAACACTCTCAGTGTTGAGGCGCGAAGATAAATTGATGCCATCATCTCGTCTTCATCAGTGGACTGACACCGATGCCGACGAGCTGAGGCGCCTGTTTGCGATTTACATGTTCATGGGGATTGATAAGCGGACTTTGCAAAATGAATATTGGTCATCAGGAAATTTTCTCGAAATACCCAGATTCAAGAACATTATGACTTATAATCGCtattttttacttaacaaaTTCCTTCATTTTGTGGATAATCATGATGCGAGTCGGGGTTACTTGCAATACGAAGGGAAAAAGTTATCGGCGAAATTAGCGAAAATAGAACCCGTGATCTCAcatctcaataaaaaaaattcgtcCCTTTACAATTTGCAGAGGGATATTGCGATTGATGAGGAGTTGACCTTACTTAAGGGCCGTTTTTCCTGGGCTCAGGCAATAAGGTCAAAGACTACGCGGCTTGGGGTAAAATCTTACGAGCTCTGTGAGACACAAACAGGGTACCTTTATAGATTTGAAATTTACTTGGGGGAAATCTCTGATCAGGACGATATTGTCCAGCCTGCTATTGACTTGGCTGCGTTGGCCAGGTACCTCAAGAGTTTGGGTGTAGATTGTTTGGGAACTTTGCGCACAAATCGTAAGAACGTGCCTCATGAGATCGCGACGGCACCGGTGAGTGTGTCGAAGGGGACCATCATCGCGCGCCATTCTGGTGATGTTTCCGTTATTGCATGGAAAGATACCAAAGTGGTGACGATGATCTCCACCTACCACAACGCCGACACCTACGTCGGACCGCAGGCAGGGAAATCGGTAGCAAAACCTGTGATCATACGAGACTACAACAAAACAATGGGAGGGGTTGATTTAAGAAATCAACAACTCTCGATGTATTTGTTGGAGCGCAAGAGATGTGTCAAATGGTTTATGAAGACGTTTAAAAGGTTGCTTAACATGAGCGTACATAATGCTTTCGTTATGTACGTGGCCTCTTTGAAACGTCGCCGGCTACCGCCTGTGACGTATCGTGATTTCCGTATACGTCTGGCACATACTCTGTGTGTCCGACACCGCTCCGATCCTGTGGAGATTAGCGAGCCCGATGGGAATGTCATGAGGCTGAAACGAGATGTCGTGCACGTCCCAAAAGTTTGGACGGGCAGAGATTATAGAAAGCGTTGTGTTGTTCACCAAAGGCTTTCGGAAACCAAATTTGTGCATACTTCATGCGTAACCTGTGACGTATTTCTGTGTTTTGATTCTAAAGATGACACTACATCCAAAAACTGTTGGGCGCAGTGGCATTCTATGGTTACGCTCGAAGGACGAGAAAAGCATCCCGACCTGATAATAAAGACAGAAGTGAAGCAGGAAATTGTTAGCAGCGATGAAGAGATCTGGATTGTGCAGACGGCACCCGAGACAGGGAGGGAGGACAGGGCGAGAAAGGGGCACAAATGTGACGGATgcaggcaATTCCACGCGCACGGTGCTCCGTCAAGCGACTCGTACGCGTGTGGACAGTGCGACTCGGCGTTTGACACGGAAACGGAACTGTTTGATCACGTGCACTTCCAGCATGACACGCGCAAGCGCTGGCAGTGCCCGCAACCGCACTGCGGGAAGACTTTCTATCTCAGGGCAACCTTAACAAAGCACAGTCGCACCCACACCGACACGAGGCGCTATGTTTGCGTGAAATGCGGGAAGAGATTCTTTGACAAGCAAACTTTGGACGAGCATGGAGTCACACATTTACAGATAAAACCGTACCAGTGCCACATCTGCCTCAAGCAGTTGACGCGCGTGTCCCGCTTGCGGATGCACGTGCGTGCGCACCGGgagcgcgccgcgcccgcgcgtGCGCCCGCCTGCGCGCACTGCCGCCGCGCCTTCAGAGACGTGCACGATGCGCAGGAACATGCGTCAAAATCTACCGAGTGCATTGAAGCATTCGCCAAGAACGTTAAGGAGGAAAACGACGAACCAGCTGTTCAACTCTCGCCCACTAGTGGGCTTGTCAGACACACCATACAGGTCATAGAATCGCCAGAACCCTCGAAGCGGATAAAGCGACAGGTGGCGTCCCCTATAGCGGAGCCACTGCTGTCAAAACTGACAGACGACGCGCGCTCGCTGATCCGAATCGTCGAAATAGACAAAGCTTTCCGTTGCGAGTTCTGCGAAGATGTGTTCTATATAGAAGAAGGGTTGAACAAGCATCGTGAAATGCACAAGGGAGTGAAGAATCCATTTACTTGCCATATCTGCAAAGTTAGCTTTGCAACTTACTCTAGATGTACAACTCACAAAACTACTCACGGGTTTTACAAGCGCGGCGGGGAGGCGCGGGCAGTGCCCGACTTCCCGGTCGTCAAGCATTTCTTATGCGAAGACTGCGGCCGGTCTTATCTCCATTGGACGTATCTACAAGTCCACCGCCGTATGAAACATCCGAACGACAATTACCAGCACAAGTGTACTTATTGTGAAATGACTTTCCCGAACAGCTGGAGTTTGGCGTACCATCGGAAAAAGATGCATGTAAAAGGCGGGCAAGAAGGCAATAAAAATTCAACACAAAATTATAGAATACCTTGCAGAGATTGCAATGAAGTGTTGCCTAACAAAAATGCGCTTTACAAACATAGGCAGAAGGAACACAGCGACAGTTCAATACAGGAGTCATTTGACGGCGCGAATAACGACAATATTATGGGAGAGAGTACGGACGGGGGCGCGCGTGTGTCCGGTGTGGGCGCGTGGGCGTGCGGCGCATGCGCGCGGCGCTTCCACGTGCGCGCGGAACTACGCGCCCACGTGCGCACACACCACCCGCGCCACGTCGCCGTCATAGAGATACACGGCGTGAGTCCAACCACAGATGAAGTAATGAAAGTTTTAGATCTGAACTATATATCAAGAGATAGAGTAATTGAGATTAATCTGATGTCCTTCCTGGAGGGCACGACGAACATAGTTCCTAACAGCGCAAGAGCTTTGTCTTTACTGAGCAATGTGCCAAAAACGCCAATGCAGTGCCAGCGCTCGCAGACAAACATCGTCTCCAGTAATCCGGTAGAAGATTATCAGATGATGCGTTCTGCCAATATATTAGCCAGTATCAGAAGACCGTCTATTCTACAGAGATCGGAGAACACACACGCGCAAACATTAGAAGGGACCGCCCAGAATACGCAAGGGTTGAACGTACAACTTTTACTGCGTGACGGAACGATGGTCAGCAGTAACCAATCACAGCAAAGCTTGAAAGAATCAACGCTGCTTGACTAA
- Protein Sequence
- MPIRYLVREVVQRTTSSGLFLVQRSVLGYDIDLASLTKDQPVDLNGNVYQFLLNLERDHPDMVQILDQNEPSDNQEYVLDDGTEIRASQIHFDNEDAPIDLTLEKLPFVKVNDDVEDEIVEGFYEDVLFTITASPIGSLLASPKQNPINGVPFKLVCNNTTGFEAQFTRYLEENTKTYATLNNVTKKNKSPRSLIKDNFNSKEEFRYTREEILNMLKDSPVTSIPYEVNEKKHVRKTDPTRMIQKSTAKTLDIDGLVIADEDNRSCFICDNSVIDKLYIFDKEDQKLHRCSPQKIVSTQLKVICDLCLNENFRPSRMKGANQFLNSGEYLVIKNNQQYIFQKIKSFKEVKKIKNKDEFVKVEIGSDGEIVTKPIDNDDDVIIINDDRKDSCSDVKLIEGEPEIDKIIDNLEEADEEVKQFLGTYEHNAGEAKELKCRFCEQVFQSTSEVASHGETHKHDTEEEIVFPCPLCDYGYANFKWLKGHIKAAHEKNEKGHRDATEKASRCVHTKELKESSTNVAEPRIPKQTNILEGSSGSTFGVTVESVRLDTTPGGHLDTSLEERIDAIDVSDDDVEQGAAAEQIHRLVCLQPEPLASSSTAAENIGDASGNDCSQSVMQTGSVADGTAADAGVRPSTSGVRPRQVARSKINKDSDIESDSDDECNVSSLETTGLAGVGRDIPDNDELDEREGNIVASVESAMDEAADGLLGISHSFTWEEDFESFRSVPEEFKGPIAGPLKDYDSPYDAFIDIWDKDIMELIALETNRYAKQTLSVLRREDKLMPSSRLHQWTDTDADELRRLFAIYMFMGIDKRTLQNEYWSSGNFLEIPRFKNIMTYNRYFLLNKFLHFVDNHDASRGYLQYEGKKLSAKLAKIEPVISHLNKKNSSLYNLQRDIAIDEELTLLKGRFSWAQAIRSKTTRLGVKSYELCETQTGYLYRFEIYLGEISDQDDIVQPAIDLAALARYLKSLGVDCLGTLRTNRKNVPHEIATAPVSVSKGTIIARHSGDVSVIAWKDTKVVTMISTYHNADTYVGPQAGKSVAKPVIIRDYNKTMGGVDLRNQQLSMYLLERKRCVKWFMKTFKRLLNMSVHNAFVMYVASLKRRRLPPVTYRDFRIRLAHTLCVRHRSDPVEISEPDGNVMRLKRDVVHVPKVWTGRDYRKRCVVHQRLSETKFVHTSCVTCDVFLCFDSKDDTTSKNCWAQWHSMVTLEGREKHPDLIIKTEVKQEIVSSDEEIWIVQTAPETGREDRARKGHKCDGCRQFHAHGAPSSDSYACGQCDSAFDTETELFDHVHFQHDTRKRWQCPQPHCGKTFYLRATLTKHSRTHTDTRRYVCVKCGKRFFDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHRERAAPARAPACAHCRRAFRDVHDAQEHASKSTECIEAFAKNVKEENDEPAVQLSPTSGLVRHTIQVIESPEPSKRIKRQVASPIAEPLLSKLTDDARSLIRIVEIDKAFRCEFCEDVFYIEEGLNKHREMHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRGGEARAVPDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHPNDNYQHKCTYCEMTFPNSWSLAYHRKKMHVKGGQEGNKNSTQNYRIPCRDCNEVLPNKNALYKHRQKEHSDSSIQESFDGANNDNIMGESTDGGARVSGVGAWACGACARRFHVRAELRAHVRTHHPRHVAVIEIHGVSPTTDEVMKVLDLNYISRDRVIEINLMSFLEGTTNIVPNSARALSLLSNVPKTPMQCQRSQTNIVSSNPVEDYQMMRSANILASIRRPSILQRSENTHAQTLEGTAQNTQGLNVQLLLRDGTMVSSNQSQQSLKESTLLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -