Basic Information

Insect: Biston stratarius
Gene Symbol: su(Hw)
Assembly: GCA_950106695.1
Location: OX467108.1:18971285-18980903[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.31 22 6.2 3.1 1 23 83 107 83 107 0.94

2 12 0.011 0.82 10.7 0.2 3 23 116 137 116 137 0.97

3 12 3.7e-05 0.0027 18.5 0.7 1 20 142 161 142 163 0.95

4 12 9.5e-07 6.9e-05 23.5 0.8 1 23 174 197 174 197 0.96

5 12 0.27 20 6.4 1.5 1 23 203 228 203 228 0.92

6 12 0.00032 0.023 15.6 0.6 1 23 235 257 235 257 0.96

7 12 0.0033 0.24 12.4 0.1 1 23 262 284 262 284 0.98

8 12 6.3e-06 0.00046 20.9 0.2 1 23 290 312 290 312 0.99

9 12 0.33 24 6.1 0.7 2 23 319 341 318 341 0.96

10 12 0.11 8.2 7.6 1.0 3 23 349 374 348 374 0.85

11 12 5.8e-05 0.0042 17.9 1.2 2 23 383 404 382 404 0.97

12 12 3.6 2.6e+02 2.9 0.3 3 23 412 435 411 435 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.31	22	6.2	3.1	1	23	83	107	83	107	0.94
2	12	0.011	0.82	10.7	0.2	3	23	116	137	116	137	0.97
3	12	3.7e-05	0.0027	18.5	0.7	1	20	142	161	142	163	0.95
4	12	9.5e-07	6.9e-05	23.5	0.8	1	23	174	197	174	197	0.96
5	12	0.27	20	6.4	1.5	1	23	203	228	203	228	0.92
6	12	0.00032	0.023	15.6	0.6	1	23	235	257	235	257	0.96
7	12	0.0033	0.24	12.4	0.1	1	23	262	284	262	284	0.98
8	12	6.3e-06	0.00046	20.9	0.2	1	23	290	312	290	312	0.99
9	12	0.33	24	6.1	0.7	2	23	319	341	318	341	0.96
10	12	0.11	8.2	7.6	1.0	3	23	349	374	348	374	0.85
11	12	5.8e-05	0.0042	17.9	1.2	2	23	383	404	382	404	0.97
12	12	3.6	2.6e+02	2.9	0.3	3	23	412	435	411	435	0.81

Sequence Information

Coding Sequence: ATGCCACCTAAACATAAAAAGATTGGGCGTCCACCAGGATCAAAgaataagggttccattttacTTCGGAACTCTAAAAAAGCGAAGAAACTTACGGCAGTTTCCTCGATGTTAAAAGAGATAAGAAATGATATAAAGAGGACGATCAAAGTTGAGAATTCTAGTGAATATAGTCATAGAAGTGAGTACAGCGACCCGGACGACCCTAACCTATCCATACGAAGTATTGAGAAAAACAAGattatatacaactGCAAGAAGTGTACTAATAAGAACTTCAAGTTTGAGAAAAATTATAAGGAACACCTATTATTGGAACATTCAACATCGCCAGGCAGTGTAGGGTGTCAGCAGTGTCCTGTGGTTTGCCCTGATAAGGAGACATTGGAGGTGCATATTAGCAAAGTTCATGACCGAAATGTCTACAACTGTCAACACTGTGGCAGGGAGTTTGTCAGACAGGCTCATGTACTACGACACATGGCACAAAAAGGATGTGATGGTGGTGGTGTTGCATCATTTCCATGTGAAATATGCAATGCAACTTTTACAAGAAAAGATAACCTAATTGTTCATCTCCGTCATATGCACATAAGAAAGCAGTTTTACTCGTGCAAGCAACCAAAATGTGATTTTGCAAGCAAgaattttacaaaacttatcAGACATTGGCATGCAATCCATGCAGAAGTACCTCATCGTTTTGATTGTCATTATTGTGGTAAGTCAACCATGTCTCGAGCAGCAATGGCCAAGCACCTTGAAATTCATGGAGATAAAAAATATGCTTGTGATGTGtGCGGATATAGTACGTACACGATCGAGGTGATGCGGCGGCATATCCTGACGCACGTGTCTGACAAGCCGTACAAATGCGCTGAGTGCGGCTCGTCTTATATCCAGCGCGCGCAGCTCGAGCGCCATATGGAGAAGCACGCCATCGGCGCCGGCACGCGTTGCGATCTCTGCAGCTCCACCTTCGACAGCGTGgcaaaAATGATGATCCATAAACGGAAAGAACACGATGGAATAGCTAAACAAGTGTGCCCATTCAAAGATTGCTCTCACATGAAAAAGGAGTTTAATAGTGAAGATACACTTATAAATCATATAAACaagcatttgcagtataaaaacaGATTGTGGTCTTGCGAGGTGTGCAAGAAGCAGTTCACGTCGGAGATGAACATGCGGCGTCACCTGAGTACGCACACGTTGGATCGGCCGCGCCGCTGCATGTACTGCGTGTCGGCGCGCGCGTACGTGCGCGGCCAGCAGCTCGTGCGCCACGTACGCAAGTTCCATCCCGATGTGTTCCGCACGCATCTCGCGCACGTGCGCAACGTGCTCGTAACGAATCCGAAGAGCGAGCGCGTGACCAAGTCGGAGCTCGAGTCGATCCTGAATGTACTAGACGCGGAGTCGGAGCGCATTTTAGAGGGGTACGGTGGCGCCGACGTACTCTATGGTGGCATGCAGTCCGCGCCAGAACCAGACTCGGAGGAGGAAGATTCACCCCTAATGTCGGAAGAAGTACTAGCTGAGAATTTGGGGAATCTTCTGGAGCATTTAATTGATAAAGACACTCTGCAGTGCCTTGGATGGCCCGAGGAATCTGTTGATAATATCCTGGAACGCGTAATCGAGCAGTGCGGCGCGAAGCCGGCCGACCGCGACATGTGGTCCCGCGTGCAACGGCTGCGGGAGAACGCAAAGCACCTTTTCCTATACGTGGTGGACGATAAAAGCGTAGCAATGATGCTGGGCACACACACCATCGATCAGATCGTGAAACATATTCTAAATCAAGTAGAGTCGGACGGCGCAGGCGCATCGCTCGATGACGGAATCACTGGCTACGGCGAGCCAGATGAGATCGAGATCGAACTTGCTGTCTCATAG
Protein Sequence: MPPKHKKIGRPPGSKNKGSILLRNSKKAKKLTAVSSMLKEIRNDIKRTIKVENSSEYSHRSEYSDPDDPNLSIRSIEKNKIIYNCKKCTNKNFKFEKNYKEHLLLEHSTSPGSVGCQQCPVVCPDKETLEVHISKVHDRNVYNCQHCGREFVRQAHVLRHMAQKGCDGGGVASFPCEICNATFTRKDNLIVHLRHMHIRKQFYSCKQPKCDFASKNFTKLIRHWHAIHAEVPHRFDCHYCGKSTMSRAAMAKHLEIHGDKKYACDVCGYSTYTIEVMRRHILTHVSDKPYKCAECGSSYIQRAQLERHMEKHAIGAGTRCDLCSSTFDSVAKMMIHKRKEHDGIAKQVCPFKDCSHMKKEFNSEDTLINHINKHLQYKNRLWSCEVCKKQFTSEMNMRRHLSTHTLDRPRRCMYCVSARAYVRGQQLVRHVRKFHPDVFRTHLAHVRNVLVTNPKSERVTKSELESILNVLDAESERILEGYGGADVLYGGMQSAPEPDSEEEDSPLMSEEVLAENLGNLLEHLIDKDTLQCLGWPEESVDNILERVIEQCGAKPADRDMWSRVQRLRENAKHLFLYVVDDKSVAMMLGTHTIDQIVKHILNQVESDGAGASLDDGITGYGEPDEIEIELAVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00206392;
90% Identity: iTF_00206392;
80% Identity: -