Basic Information

Insect: Biston stratarius
Gene Symbol: -
Assembly: GCA_950106695.1
Location: OX467120.1:2395369-2401541[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 7.7 7.7 0.7 1 23 249 271 249 271 0.95

2 10 0.056 4.1 8.5 0.1 2 23 298 320 297 320 0.95

3 10 0.0026 0.19 12.7 1.6 2 23 343 364 342 364 0.95

4 10 6.9e-05 0.005 17.7 0.9 1 23 368 391 368 391 0.97

5 10 1.2e-05 0.00085 20.1 0.6 1 23 396 419 396 419 0.94

6 10 0.084 6.1 8.0 1.1 1 23 425 448 425 448 0.93

7 10 6.7e-07 4.9e-05 24.0 2.5 1 23 455 478 455 478 0.98

8 10 0.0025 0.18 12.8 2.5 1 23 484 506 484 506 0.97

9 10 5.3e-07 3.9e-05 24.3 1.6 1 23 512 534 512 534 0.98

10 10 8.3e-05 0.0061 17.4 2.1 1 23 540 562 540 563 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	7.7	7.7	0.7	1	23	249	271	249	271	0.95
2	10	0.056	4.1	8.5	0.1	2	23	298	320	297	320	0.95
3	10	0.0026	0.19	12.7	1.6	2	23	343	364	342	364	0.95
4	10	6.9e-05	0.005	17.7	0.9	1	23	368	391	368	391	0.97
5	10	1.2e-05	0.00085	20.1	0.6	1	23	396	419	396	419	0.94
6	10	0.084	6.1	8.0	1.1	1	23	425	448	425	448	0.93
7	10	6.7e-07	4.9e-05	24.0	2.5	1	23	455	478	455	478	0.98
8	10	0.0025	0.18	12.8	2.5	1	23	484	506	484	506	0.97
9	10	5.3e-07	3.9e-05	24.3	1.6	1	23	512	534	512	534	0.98
10	10	8.3e-05	0.0061	17.4	2.1	1	23	540	562	540	563	0.95

Sequence Information

Coding Sequence: ATggatcacaaaaataaaaagagttaCGGCAAATGTCGCTGTTGTTTATCAAAAGGCACCCATCGTGATATGCTCAAAGAATATTCCCATTGCGGAGTCCGGGAGGTTTACATCGAGACTTTTATGGATTGTTTTAATCTATTCCTGTCAACAGATAATTCACTAAGCACATTGATATGTAGTCAATGCGTTACAAAGCTTCGCGAGGCAAGTGCCTTCCGTACACTGGTGGTCAACACAGAGAGACAGCTGTTAGAAGCTGTGTCCAATCAAAAAGACATGGTGTTTGTTAATGTACCAACAGAAGATCCAGTACCAAACAGCGAGGTGAAGGTAGAAACCCTGGCTACTGTAAAGGTAGAGGAATTCAGCGATGATGATGCAGACATGATCTTCGATTCAGACTTCATATCTGCTGATGACTTGATTGAGCCAGATGCAAAGCTCGACGACGACTCTTTAGTGGCGGGCGAGGCGGCACTAGTAGCTCGTTTCAACCACAACCTCCGGCCGCTACCCACGCGCGCCTCACTCTACGATTGTTGTCCGGAATATGTAGCGCATCTCGACCTTCTTAATAATATGAAAATAACCTCAAGCACTGTGAAACGACGTCTAGAACAAAAGAAGGCTTCacgaaacaaaaatgtatacgtCTCAGAAAAACTAGCCCACATCACCAACGCTACAACCTTACTCCAGTATTCTAACCTGACTCCTTTCAAAAGCAAAAGCCGTTCCGGCTACCCCTGCTTCTACTGTAGAAACATATTTGAAGACTTCAACAAACTCAGAGAACACGTATTGGATCATAAAGCCATAGAAATAGTTCGAGTCTTGAAGCAGTATGGTCCGGAAAGTTTGGTTGTGTACGCAGAAGTGTCTAATCTACAATGCAACATATGCAGTATAAGAATCCCAAACATAAATGAACTCAAAACGCATCTGATTAAGGTTCACAACAAGAAGATGTATCCGGAAGTATCAGATAGAGTTATACCATTCAAAATTAATGTAGGGTTATGCGAGTGCCAGATTTGTGGATGCAATTTTGAGACGTTTGGTGCCATTGAGAGGCATATGAATGGACATTATAGAAACTATGTCTGTAAAGATTGTGGCTCgggttttgttacaaaatacagGCTCAAAGTGCATACAAAAAGTATGCACGTAGACGGTAGCTTCCCTTGTGAGTTCTGTGGCAAAGTCTTCAGTACGCAGCAAAAGTATAAGAACCATGTCAACGCTGTACACAAAATGATAAAACGTTTCAAATGTGTCAAATGTCCACAACGGTTTGCTGAATACTTTAGAAGACAACGGCATATGGAAGAAATTCACGGGGTGACTCCTCTAAAATATAAGTGTAATGTGTGTGATAGATCGTTTGATAGAAGATACACTTTGTCTAGACATTTGAAACGTGATCATTTAGAAGAGAGGGACTATCAGTGTGAAGTGTGTGCATATAAGTGTTTTACGAAGAACGAGCTAAAAGTTCATATGGTGAAGCATAACGGGGAGAGGATATTCGAGTGTTCGGTATGTAAGAAATCATATGCTAGGAAGAAAACTTTGAGGGAGCATATGCGAATACATAACAATGATAGGAGATTTGCTTGTGCTGTGTGCGGACAAGCATTCGTGCAGAAATGTAGTTTGAAGGGACACTTAAAGACGCACCATCTAGAATATAATATGCAGTAG
Protein Sequence: MDHKNKKSYGKCRCCLSKGTHRDMLKEYSHCGVREVYIETFMDCFNLFLSTDNSLSTLICSQCVTKLREASAFRTLVVNTERQLLEAVSNQKDMVFVNVPTEDPVPNSEVKVETLATVKVEEFSDDDADMIFDSDFISADDLIEPDAKLDDDSLVAGEAALVARFNHNLRPLPTRASLYDCCPEYVAHLDLLNNMKITSSTVKRRLEQKKASRNKNVYVSEKLAHITNATTLLQYSNLTPFKSKSRSGYPCFYCRNIFEDFNKLREHVLDHKAIEIVRVLKQYGPESLVVYAEVSNLQCNICSIRIPNINELKTHLIKVHNKKMYPEVSDRVIPFKINVGLCECQICGCNFETFGAIERHMNGHYRNYVCKDCGSGFVTKYRLKVHTKSMHVDGSFPCEFCGKVFSTQQKYKNHVNAVHKMIKRFKCVKCPQRFAEYFRRQRHMEEIHGVTPLKYKCNVCDRSFDRRYTLSRHLKRDHLEERDYQCEVCAYKCFTKNELKVHMVKHNGERIFECSVCKKSYARKKTLREHMRIHNNDRRFACAVCGQAFVQKCSLKGHLKTHHLEYNMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00033174;
90% Identity: iTF_00206355;
80% Identity: -