Bstr022108.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- -
- Assembly
- GCA_950106695.1
- Location
- OX467120.1:2430456-2434075[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.026 1.9 9.6 0.5 3 23 180 201 178 201 0.96 2 11 0.011 0.83 10.7 0.6 2 23 228 249 227 250 0.94 3 11 0.067 4.9 8.3 0.9 2 23 273 294 272 294 0.96 4 11 0.025 1.8 9.7 0.0 2 19 299 316 298 318 0.94 5 11 5.2e-05 0.0038 18.1 2.4 1 23 325 348 325 348 0.97 6 11 0.35 25 6.0 0.6 1 20 354 373 354 377 0.78 7 11 0.00033 0.024 15.5 0.2 3 23 386 407 384 407 0.94 8 11 3.6e-06 0.00026 21.7 0.5 1 23 413 435 413 435 0.97 9 11 2.3e-07 1.6e-05 25.5 1.5 1 23 441 463 441 463 0.99 10 11 1.4e-06 0.0001 23.0 1.1 1 23 469 491 469 491 0.98 11 11 0.017 1.2 10.2 0.1 1 23 500 523 500 523 0.97
Sequence Information
- Coding Sequence
- ATGACTTTTACATCAGCAATCGGTATCCTAAGTAACATCGGTAGCGTGGAAGTTAAGGAAGATGTCGAAACCAACTGGGGCTTAACGATCAAGAAAGTCAAATCTGAACCAGCCGTAACCGACCCTAGCGAATTAGAATATGAATATTCACACCCCGTAATTACTAGActtaactataaattaaaagaaattgaaCCTAAAGAAGGCACGGGAAAGAAAGTAGCgagcaaacaaaaaaagaaatccTATATCCGTAAAACTGAAATACAAACGCTTGACGTTCAAATAGCTAAGGTTAACCAGGTTAAAAACGAGATAAAAGAGTCTATCGATAAGAAAGTTGCTAAGGATTGTAAACCGAAACCTATGCCAAAACTTAAAGTACCACTCACAGTATCGTTAAAACCGCCTCCGGGTGTAGATCTAGAATTCAAAAAGTCTTTAGAGCTGGACAAGCATCGATATAACATACGTATGATCTTAAATTATTCTAACGCTACTCCGATCCGCGCCCACTACATGGGTAACGGATACGGCTGCAGCTTTTGCAAGCAGTTCTACCCTAAAGCAGCAGACCTCAAGAGCCACACACTAAAAGACCACGACCGAAAAGAAAAGACCAAATTCATGCAAAGAGCGTTCTTAGGTATCTTCGTAGTAAAACTTGATATCACAGACTTGCGATGCACTATTTGTAAAGCTGAATTGGATACGCTGGATGATTTGACTTCACATTTGAAAGatcatcataaaaaagtattatataccGATATAAAGAGCCAAACGATTTGCTTCAAGCTGAATAACGAAGAGTTGAAGTGTATGTTTTGTAAGATTCCTAGCAGTAGCTTTAAACAGCTTCTAGAGCATATGAATCAACACTATAGAAATTGGGTTTGCGATATCTGTGACGCTGGATTTGTCACTCAAAGAATGCTATCAGTCCACTCGGACTGTCACAAGCAAGGGGAATTTCAATGCGATATCTGCAAGAAGATGTTCGACAAATTGAGATCGTTAAAATATCATTTACGCCAATCACATTCCGGATTGAACAGGTACAAATGTTACCAGTGTGAAGAGAAATTTAGTACAGTGAAAATAAAGAAAGCCCACATGGTAGAAGTTCATGGAGCCGAATTCTCGAAGGTTCCCTGCCTGGCTTGCGATAAAACTTTTATAGATAAAAACGCTTTAAGAATTCATACGAAGAGAGATCATCTGATGGAGAGACGATTTCAATGCACTGAATGCGCTAAATCGTTTTACACTAATGCGTTGTTGAAGAACCATATGGTCATACATTCGGGGACACGGGAGTTCAAATGCGAACTGTGCGGACGTGATTTCGCTAGAAAGAAAACTTTGCTGACTCACATGCGTACTCATAGAGAGGACGCTAAATTCATCTGCCAGATGTGTCAGAAAGTTTTCTACACGCAATCGTCGCTTGAGACGCATGTGCAGACGCATACGATTCCACGGGACGTTTCCCGTTTTAATTGTGAGAGTTGTGAATTAGCCTTTTTTGAGCTAGAGGCGTTTCAGGATCATATGATGACTATTCACGAGGAAATCGCTTTAGAATAG
- Protein Sequence
- MTFTSAIGILSNIGSVEVKEDVETNWGLTIKKVKSEPAVTDPSELEYEYSHPVITRLNYKLKEIEPKEGTGKKVASKQKKKSYIRKTEIQTLDVQIAKVNQVKNEIKESIDKKVAKDCKPKPMPKLKVPLTVSLKPPPGVDLEFKKSLELDKHRYNIRMILNYSNATPIRAHYMGNGYGCSFCKQFYPKAADLKSHTLKDHDRKEKTKFMQRAFLGIFVVKLDITDLRCTICKAELDTLDDLTSHLKDHHKKVLYTDIKSQTICFKLNNEELKCMFCKIPSSSFKQLLEHMNQHYRNWVCDICDAGFVTQRMLSVHSDCHKQGEFQCDICKKMFDKLRSLKYHLRQSHSGLNRYKCYQCEEKFSTVKIKKAHMVEVHGAEFSKVPCLACDKTFIDKNALRIHTKRDHLMERRFQCTECAKSFYTNALLKNHMVIHSGTREFKCELCGRDFARKKTLLTHMRTHREDAKFICQMCQKVFYTQSSLETHVQTHTIPRDVSRFNCESCELAFFELEAFQDHMMTIHEEIALE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00206358;
- 90% Identity
- iTF_00206358;
- 80% Identity
- -