Bstr022069.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- -
- Assembly
- GCA_950106695.1
- Location
- OX467120.1:2149717-2152196[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00072 0.052 14.5 1.1 2 23 41 62 40 62 0.97 2 16 0.00082 0.06 14.3 0.2 2 23 66 87 65 87 0.96 3 16 0.00015 0.011 16.6 2.1 1 23 92 115 92 115 0.95 4 16 0.51 37 5.5 4.7 2 23 127 149 126 149 0.95 5 16 0.005 0.36 11.8 1.7 1 23 155 178 155 178 0.96 6 16 1.5e-05 0.0011 19.8 0.5 2 23 183 204 182 204 0.96 7 16 0.033 2.4 9.2 0.5 1 23 272 294 272 294 0.98 8 16 1.9 1.4e+02 3.7 0.5 2 23 322 344 321 344 0.94 9 16 4.9e-05 0.0036 18.1 0.6 3 23 369 389 367 389 0.96 10 16 0.0059 0.43 11.6 0.5 2 23 393 414 392 414 0.96 11 16 0.0039 0.29 12.2 5.9 1 23 419 441 419 442 0.95 12 16 0.19 14 6.9 2.5 2 23 454 476 453 476 0.95 13 16 0.00087 0.063 14.2 0.4 1 23 482 505 482 505 0.98 14 16 4.6e-05 0.0034 18.2 0.0 2 23 510 531 509 531 0.96 15 16 0.0001 0.0076 17.1 1.2 1 23 537 560 537 560 0.97 16 16 0.0022 0.16 12.9 1.6 1 23 564 587 564 587 0.97
Sequence Information
- Coding Sequence
- ATGAAATACTCAAATCTTGACGATATTAGAAGTCATCTAATCACAGCTCATATAAAAGTCTTTAACAAAGGTGGCAATGGTCTCATTGCTTATAACCTCAGCATGCCAAATGCCAATGTTTCTTGTCATGTATGTAACACGGAATTCCCCTCTTTCTTATCTTTAAAGCTCCACATGAAAATTCACGAGAACTTGATCTGTGAAACATGTGGGTTAGGGTTTTTGACACAAAACACTCTAAAACGTCATATGATCGTCCACCAGAATGGTCATTATGAATGTGAGCACTGTCACAAAGTGTTCCCTACCACAGCAAAGTTAAACTATCACACGGATATAGTTCACAAACCAAAAAACGAGAAGAAAGGAAGATCTCAGAAGTGCCCGCATTGCTTGGAAAATTTCATTTCGCACTACAAAAAGTTGACTCATATGAAAGAATTTCACGACGTCACTTTCGAATTTCATTGTCAGGCTTGCGATTCTGTTTATCCGACTAAAACTGCTCTGACAAGACACACTAAAAAAGTCCACATACAAGATatagtgtgcaagatttgcGGAAAGTGTTTTGGATTTCTCGGTGAACTGAAGGAACACTTGAGAGGCCATACGAACAAGAGGACCTTTGTCTGTGCCCTCTGCCAGGTGGCGTACAAGCATGAGAGAGCCCCGGCATCAACCCCTGAATCCGTCCACACAGACACTGGCCCAAGAACTAGTGCCTGGATAATAACAGCAACAGAACGCGAGAATGCCGCCACGTTCCTACAATACACAACTGTCATACCTTTCACATTATTCCACGGCAACTACAAATGCTTCTACTGCGTTGAAACATTTACAGAACTACCCCCGATTTTGCAGCACACGAGAACACACGTAATCCCAGACGAATCCACTCTATTAAGTAAACACATAAAAAATGGCAAACGAGTCGTGACAGTTGACGCATCTAAACTTAAATGCAGAATTTGTGAATTAAATCATACAGATCTAGGTGATATTAGAAAACATTTGatcacggttcataagataGAGTTTAACGAATGTGGAAACGGTCTCATGGCTTATAATTTAAGCACACCAAATGGCCGCTTGGCGTGCCATACATGCGGCATGGAATTCGTCTCCTTTATCTCTTTAAATCGTCACATGAATGTCCACGATAGCATTGTCTGCGATACATGCGGCTTGGGCTTTCTGACTCATAGCAGATTGAGACAGCATATGCTTGTTCACGAAGTAGGAAATCACGAATGTGAACAATGTCATAGAATATACCCGACTAAATCAAAGCTGTATTACCATATAGACACACACCACGAACAGACGAACGAGAAAAAATTAAAGCCTCAAAAATGTCCGCATTGTTTGGAAAGGTTCGCCACGTATTATAGAAAGATGCTTCATATGAAAGAAACTCACGGGATCACTTTCGAGTTTAAGTGTCAGGCTTGCAATGCTGTTTATCCAAATAAATTGGCTTTGACGCGACACACAAGGAAAGTTCACATACGTAATATAGAATGCAATGTGTGTGGAAGTTATTTTGGGAATCCAGGCGCGTTGCGGAGGCATATGAGAGGACATACAGATGAGAGAACTTTCATCTGCGTCATCTGCCAGAAGGCGTACAAGCATGAGAGAGAGCTCGGAAGGCACATGAAGAAAATTCATAGTTTTGGGTTCACTTGCTTTAAATGTGGGAAAGGGTTTTTGGACAAGACTGATTTGAGTGAACATAAGAAGCGAGACCATGCATAG
- Protein Sequence
- MKYSNLDDIRSHLITAHIKVFNKGGNGLIAYNLSMPNANVSCHVCNTEFPSFLSLKLHMKIHENLICETCGLGFLTQNTLKRHMIVHQNGHYECEHCHKVFPTTAKLNYHTDIVHKPKNEKKGRSQKCPHCLENFISHYKKLTHMKEFHDVTFEFHCQACDSVYPTKTALTRHTKKVHIQDIVCKICGKCFGFLGELKEHLRGHTNKRTFVCALCQVAYKHERAPASTPESVHTDTGPRTSAWIITATERENAATFLQYTTVIPFTLFHGNYKCFYCVETFTELPPILQHTRTHVIPDESTLLSKHIKNGKRVVTVDASKLKCRICELNHTDLGDIRKHLITVHKIEFNECGNGLMAYNLSTPNGRLACHTCGMEFVSFISLNRHMNVHDSIVCDTCGLGFLTHSRLRQHMLVHEVGNHECEQCHRIYPTKSKLYYHIDTHHEQTNEKKLKPQKCPHCLERFATYYRKMLHMKETHGITFEFKCQACNAVYPNKLALTRHTRKVHIRNIECNVCGSYFGNPGALRRHMRGHTDERTFICVICQKAYKHERELGRHMKKIHSFGFTCFKCGKGFLDKTDLSEHKKRDHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -