Bstr022067.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- -
- Assembly
- GCA_950106695.1
- Location
- OX467120.1:2139270-2144278[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0031 0.23 12.5 3.8 1 23 28 50 28 50 0.98 2 28 0.082 6 8.0 0.2 2 23 78 100 77 100 0.95 3 28 5e-05 0.0036 18.1 2.0 2 23 124 145 123 145 0.97 4 28 0.0044 0.32 12.0 2.2 2 23 149 170 148 170 0.95 5 28 0.035 2.6 9.2 4.2 1 23 175 198 175 198 0.93 6 28 2.4 1.7e+02 3.4 3.4 2 23 210 232 209 232 0.91 7 28 0.0011 0.077 14.0 0.6 1 23 238 261 238 261 0.98 8 28 5.5e-06 0.0004 21.2 0.1 2 23 266 287 265 287 0.96 9 28 0.00044 0.032 15.2 3.1 1 23 293 315 293 315 0.97 10 28 0.47 34 5.6 0.5 1 23 368 390 368 390 0.89 11 28 0.014 0.99 10.5 0.1 2 23 418 440 417 440 0.95 12 28 0.00036 0.026 15.4 4.1 2 23 464 485 463 485 0.97 13 28 0.033 2.4 9.2 0.5 2 23 489 510 488 510 0.96 14 28 0.19 14 6.8 4.2 1 23 515 538 515 538 0.94 15 28 1.9 1.3e+02 3.7 5.3 2 23 550 572 549 572 0.94 16 28 0.018 1.3 10.1 0.2 1 23 578 601 578 601 0.96 17 28 0.00011 0.0081 17.0 1.1 2 23 606 627 605 627 0.96 18 28 0.00023 0.017 16.0 2.8 1 23 633 655 633 655 0.97 19 28 0.00042 0.031 15.2 0.4 2 23 662 684 661 684 0.94 20 28 0.5 36 5.5 6.3 1 23 742 764 742 764 0.98 21 28 0.033 2.4 9.2 0.7 2 23 792 814 791 814 0.96 22 28 0.0024 0.18 12.8 3.2 1 23 837 859 837 859 0.98 23 28 0.0058 0.43 11.6 1.1 2 23 864 885 863 885 0.95 24 28 0.00078 0.057 14.4 3.0 1 23 890 913 890 913 0.94 25 28 0.00011 0.0082 17.0 0.6 1 23 951 974 951 974 0.97 26 28 4.8 3.5e+02 2.4 6.8 2 21 979 998 978 1000 0.91 27 28 3.2e-05 0.0023 18.7 4.8 1 23 1006 1028 1006 1028 0.96 28 28 0.00051 0.037 14.9 1.7 1 23 1037 1060 1037 1060 0.96
Sequence Information
- Coding Sequence
- ATGACAACGCCCGAACGAGAGAACGCAGCCACTTTCTTCGAATTCACAACCGTCACTCCTTTCACATGGCTCCAGGGTAGCTACAAATGCTTCTACTGCGATAAAACGTTCACAGAATTGCACCCAGTTTTACAACACACGAAAACACACCCAATTCCTAATCGGACTTCCTTATTACATACGCATATCACAAACGGTAAACGAGTCATCAAAATCGACGCATCTGGACTGAAATGTAGAATCTGCGAGCTAAAATACTCAGAGCTAGACGATATTAGAAAACATTTGGTCACAGTTCATaagaaagtttttaataaagctGGCAATGGGCTAATGGCTTACAACCTTAACACGACAAACGGAAACGTATCATGCCACACATGCGGAATGGAGTTCACGTCTTTCTTCTATTTAAATCGTCACATGAATGTCCATGATAACTTAATCTGTGAAACGTGTGGCTTGGGATTCAGCACACACCATAGGCTaagaaatcacagggctgttcaCCAGAAAGGAAACCACAAATGCAAGCTGTGCCAAAAAGTGTTCCCCACTAAGTTAAGGTTGCGATACCATGAGACGAGGTATCATGAACAGACAAATTTGAAGAAACTCAAGCCTCTGAAATGTCCCCATTGCTTAGAAAGATTCTCAGAGCACTATAGAAAGATGTCTCATTTGAAAGAAATCCACGGCATCACCTTTAAATTTGAGTGTCAGACTTGCAAGGCTGTTTACCCTACTAGAAGAGCCCTAACAGAGCACACTAGAAAGCTCCACATACAGAATATTGTGTGTAAAATATGCGGAAAGTTTTTTGGAACATCGGCGTCGTTGAAAATACATTTGAGAGGGCATTCCGGTGTCAGAAACTTTTTCTGTGCAGTGTGTCAAAAGGCATACATGCACGAGAAGCTGCTGAGGAAGCATATGAAGACCCATGGGTATGCGGTAACCTGCCTCGAATGTGGATCATCGGAAAGACTGCGGATCGGTCCACGAACGAGCATATGGCAAATGACGACATCAGAACGGCAGAACGCTGCCACCTTCCTGGAATATACAACCATCAAGCCTTTTTTCTACCAGCAGGCAAACTTTAAATGCTTCTACTGTAACGAAATCTTTCCTGAAGTGCAATCTGTCCTATACCATACAGAATCTCACGTGATACCAAATAGGCCCACATTATTAAAGCAATATCTTCGCAAAGGCAAAAGAGTGATAAAAGTCGACGTATCTGATCTGAAATGTAGGATATGTGAGCTGAAGTATTCAGATTTGGATGATATTAGAAAGCACTTGATAATTGTCCACAAGAAGGAGTTTAACTCGGCAGGAAACGGTCTTATAGCTTACGATCTCAGCACGAGAAACGGTCTCATGTCGTGCCACAAATGTTACAAAGAATTCAACTCCTTCTTCTCGCTGAACCGTCATATGAATGTCCATTTCAGCGTGGTCTGTGAAACTTGCGGCCTCGGTTTCATGTCTCACCAACGTCTTAACAATCACAGGATCGTACACGAAAACGGAACCCACAAATGCGAGAAATGCCTCGAAGTTTTCCCCACAAAACTCAAATTACGATACCACACCTTCAAAAAGCATGAAGTTTTAAATGTGAAGAAGTTAAAACCGCTCAAATGTCCTCATTGTTTGGAACGGTTTTCGGAGCATTACAAGAAGATGACACATTTGAAACAAACACACGGAATCTCTTTCACATTTGAATGTCCGACTTGTAAAGCTGTACTCCCGACCAGGAGAGCTTTAACTGAACACACAACGAAGCTGCACACGAGGAAAATACAATGTAATGTCTGCGGGAAATGTTTTGGGACGACTACGTTACTCAAAATGCACGCAAGGGGTCATACTGGGGAGCGCAACTTCTTCTGTTCTGTATGCAATAAGCCCTACATGCATGAGAGAACTTTACGTCAGCATATGAGGGTCCACGGCTCTGTCTGGAAGCTGACATGCTCGGAATGTGGCAGCGGCTTCCAAAATAGGAGTGACTTCAACAAACATATGGCACAGTGGCATCCTCCAGCTGTTAACTTTAATGGCATATCTCCAAATCAGAATCCAAAGTCTGAAGACTCCAAACAGCGCGAGACCACCAGCCTGTGGGAATTGACCCTCTCAGAACGCACCAACGCATCTCGGTTCGTAGAGTTAACCACCGCCAGGCCCTTCGTCTACTGCCGCTACTTCTTCAAATGCTTCTTCTGCCACGAACACTATTCCGATATCAAAAAACTTCTGGAACACACATCGACCCACGACATCCCAGCACAAACTAAAATCTTAAAAGAACTCCTCAAGAAAGGCAGAAGAACTTTAAAAGTCGACATTTCGCAGCTAAAATGTAGAATGTGCTCGAAAAATTTCACTGAACTCAATTCGATTAGAGATCATTTGATTACAGACCACGGTATAGAATTCACGCAATCTGGAAACGGTGTGGTAGCTTACAATTTGGCGACGGAAAACGATCTATTCCGCTGTCATATTTGCATCAAAaaatttcaaacatttattCTTTTAAACAGACACATGAATGTGCATTTTAGTAATTCTGTTTGCGAAATTTGCGGTACAAGTTTCATGACACACCAGAGATTAATGCAACATAAAGAAATACACCAACCAGGTGGACACCCATGCAATAGATGCAACAAAGTGTACACAACAAGTTCGAATCTAAAATTCCATATAGAAAAGACTCATGAAGGGAACAGAAAGACGCGAATGTTGCGCTGTCCACACTGTAGCGATCGATTCACGGAACACTTTAGAAAATTGAAGCATTTGAAAGAAATACACGGTATAACGTTCACTTTTGAATGCGACGTTTGCAACCTAACATTTCCGAGTAGGAGAGCTTTAACaacacatacaaacagacaacaTTCGTCTAAAACACAATGCGAAGTCTGTAAGAAATGTTTTAGCTGCGTCACAGCTTTGAAAGTCCATGTACGCTGCCATTCAAGCGAAAGAGACTATCTATGTGAAGTTTGCCAGAAATCTTACAGGCATAAGAAGAGCTTGAAGTACCATATGCGAAGCCATGCAAATGGTGACCAGATTATTAAGTTTACCTGTCCAGATTGCAGCAGTGGGTTTCATAGTAGAAGCGATTTTAATAAACACATCAAAGAGTGGCACCCGAGTAGCTATTTTGATTATGTCGTTCACTAA
- Protein Sequence
- MTTPERENAATFFEFTTVTPFTWLQGSYKCFYCDKTFTELHPVLQHTKTHPIPNRTSLLHTHITNGKRVIKIDASGLKCRICELKYSELDDIRKHLVTVHKKVFNKAGNGLMAYNLNTTNGNVSCHTCGMEFTSFFYLNRHMNVHDNLICETCGLGFSTHHRLRNHRAVHQKGNHKCKLCQKVFPTKLRLRYHETRYHEQTNLKKLKPLKCPHCLERFSEHYRKMSHLKEIHGITFKFECQTCKAVYPTRRALTEHTRKLHIQNIVCKICGKFFGTSASLKIHLRGHSGVRNFFCAVCQKAYMHEKLLRKHMKTHGYAVTCLECGSSERLRIGPRTSIWQMTTSERQNAATFLEYTTIKPFFYQQANFKCFYCNEIFPEVQSVLYHTESHVIPNRPTLLKQYLRKGKRVIKVDVSDLKCRICELKYSDLDDIRKHLIIVHKKEFNSAGNGLIAYDLSTRNGLMSCHKCYKEFNSFFSLNRHMNVHFSVVCETCGLGFMSHQRLNNHRIVHENGTHKCEKCLEVFPTKLKLRYHTFKKHEVLNVKKLKPLKCPHCLERFSEHYKKMTHLKQTHGISFTFECPTCKAVLPTRRALTEHTTKLHTRKIQCNVCGKCFGTTTLLKMHARGHTGERNFFCSVCNKPYMHERTLRQHMRVHGSVWKLTCSECGSGFQNRSDFNKHMAQWHPPAVNFNGISPNQNPKSEDSKQRETTSLWELTLSERTNASRFVELTTARPFVYCRYFFKCFFCHEHYSDIKKLLEHTSTHDIPAQTKILKELLKKGRRTLKVDISQLKCRMCSKNFTELNSIRDHLITDHGIEFTQSGNGVVAYNLATENDLFRCHICIKKFQTFILLNRHMNVHFSNSVCEICGTSFMTHQRLMQHKEIHQPGGHPCNRCNKVYTTSSNLKFHIEKTHEGNRKTRMLRCPHCSDRFTEHFRKLKHLKEIHGITFTFECDVCNLTFPSRRALTTHTNRQHSSKTQCEVCKKCFSCVTALKVHVRCHSSERDYLCEVCQKSYRHKKSLKYHMRSHANGDQIIKFTCPDCSSGFHSRSDFNKHIKEWHPSSYFDYVVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827249;
- 90% Identity
- -
- 80% Identity
- -