Bbet022174.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989884.1:1506355-1516958[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5e-05 0.0012 19.8 2.6 1 23 384 407 384 407 0.97 2 9 0.5 40 5.5 4.3 2 23 414 435 413 435 0.96 3 9 5.4 4.3e+02 2.3 0.3 1 19 439 457 439 461 0.75 4 9 0.00034 0.027 15.5 3.4 2 23 467 488 466 488 0.98 5 9 0.00058 0.046 14.8 0.3 1 23 492 515 492 515 0.96 6 9 4.9 3.9e+02 2.4 0.8 2 15 535 548 534 554 0.79 7 9 0.38 31 5.9 1.3 2 23 618 640 617 640 0.89 8 9 0.00033 0.027 15.5 2.5 1 23 679 701 679 701 0.97 9 9 0.00032 0.026 15.6 2.7 1 23 707 730 707 730 0.97
Sequence Information
- Coding Sequence
- ATGTCTGCATTAAATATTTGTAGAATTTGTCTTCGCACTGAAGCGAAAGGATACAAATTCAGCCGCTATCAGTTGAAATATTTTTACGAAGAAGTCACAGCAACTAAAGTACCAGACAGTGATGAATTGCCACAATGGTTTTGCTATGAATGTGCTGCAATGCTCCACAAGTTCCACAAGTTTAAAGAGAAATGCTATATGGGTCAGAAATGTCTCAAGGAAATACTCTGGAAAGGCCCTATCACTTATGAAGCAATTTACAAACTACCTCAAGCAAACAAACTCCAATCAACTCTAAAAATAATCACCAAAACGGATAAAGTGAAACTGTTTACTGTCAAAGTATTTGAACACATAGTGGATAATAAATCTGAAAATATTGCACAGACAATTGAAATATATTCTCATAAAAATCACCTATATAATAATTTGGTAAATAACAGCAACCAGCTTAATAATAATACTGGAAATATAATTTTTAACTTGGATACAAATCAAACAGAAAGCACTAAAGACGTCAATAACTTGGTGGGAAATGTTAATCATATTGACGATTTCAAAACGAAAAACAACCTAAAATTAGATGTAAAAAATTATTTAGATACAGACAATGCTAGTAGCTTAGATAACATTAGTAAATTTAAAACGGAAAGTGTCATGAATTTTTTTTCAGAAAATGACAACCATGATAGTTATAATGTGAATAATGTAGATACATACAACAGAAATAATTTGAAAATAGAGAACATGAATTTAGATGCAGAAAATGACATAAATCCTGATAATGTCAATAACTTAGATACAAACAAAATCAATAAGTTAGAAGCAGAAATCTTAAATACTTTAAAGTCAAATGAAGAAAGTTTTGATGCAAGTACTTTTAACAGTAATGTTCAAGCTAATTTTTGCAATGATATATCAGACTCAGTCAGTCCAATATCAATTCTAGTACAAAAAGATAAAGTAGTCAATTTAAAAAGTGAAAAAATTAACAGCACAAAAAGTAAAAACATAGAAATAAATATGAGCTCTAAAAAGCTCAGTAGACATTTAAATGAAGAAAACTGGAAGAGAGTTGTGTTAACTGAAGATGAAGCATTAAAAGAATTTAGAAGAAAAGCAGACGATCCTAAGTATTTAGATGCAACATTTAAATGCACAGATTGCTTTAAAGGATTTTCTAAAAAAAATATGTTAAACAGACATATACTCTCTAGACATAGTGAGCTGGGAGGTGTGGAATGCCGTTTCTGCCGCATGCGGTTCAAATGGAAATGTCAGTTACGTAAGCACATTATGCAACATTACACCAAATATGTGTGCCTGCTCTGCAATTTCGTCTTCCACTCGGACGCGTCGGCTCTTCTGCACGAAGAGTATCACAGCGGCACGACAAAGAAGTGCGAATATTGCGATGAGGAGTTCCGTCACGTGACGACGTACTACACACACATGCGCACGCACCGCAGCGCGCACGTGTGCGTGCGGTGCGGCGCTTCCTTCGTGTCTCGGGCAGGTCTCCGCCAGCACGCCCGCATCAAGCACCCGGACGAGCTTTTCGACAGTCTGTCATCTGAGTCGGAGGAGGACGGCCGCGAGAGCTACTGCCCTCGGTGCGACCTGCGGTTCCACTCGTCTCGTGCGCACACAGAGCATTTGTTCCACTCGGATATGCACACTGAAGGAATCAAAAAAGAAGATGACGCTCCGGCAACTAGAAAGATTATGGGCAAGAAACTACGAGAAAAGATTACCAAAGAGCTACGCAAAAGGAAGCCCGATTTAGACACACTAACGCCAGTGAAAAACAAACGAAGAAGAATATTGAAAAGGAAACACAGAAAACCGAGTACTTGTTATCAATGCGGCATGGAGTTCGCCACGCAGGCTGCGTGCATGAAGCATCACTTGGCGGCGCATCCCCGGACATCTTTCCATTCTCCGCTCGACAGGCACATCTGCGAGCTGTGCGGGGCCTCTCTCGCGCCGGGCAGTGTGGCGATGCATCAGAACATGCACTCGCGGGAGACGGTGCACACTTGCGACACCTGCGGCCGCCAGTTCCACTCGGCCGTCGGACTGAAGCGACATCTCGTGACGCATACGGGCGAGAAACCGTTCGCGTGTTCCCTGTGCGAGAAGCGTTTCACTCAGAGCAACAGTATGAAACTACACTACAAGACTTTCCATCTCAAACAACCTTACCCTAAAAGAATAAGAAAGAAAAAGAAGGACCAGCCGAACCAATCGACCGAGCAAGACGACACATACGAAGAATCGGACAGTGTACCGGAAGCAGCTGCGCCTGAAGTGCCCGAAATACACGCGCCACCGGAAGTACCCGCGATTTTGCAAGTAGTGGGGGAAAATGGTACAAGTTTGGAGGAAGAAAATATGCATTACTTGACGCTTAGTTAA
- Protein Sequence
- MSALNICRICLRTEAKGYKFSRYQLKYFYEEVTATKVPDSDELPQWFCYECAAMLHKFHKFKEKCYMGQKCLKEILWKGPITYEAIYKLPQANKLQSTLKIITKTDKVKLFTVKVFEHIVDNKSENIAQTIEIYSHKNHLYNNLVNNSNQLNNNTGNIIFNLDTNQTESTKDVNNLVGNVNHIDDFKTKNNLKLDVKNYLDTDNASSLDNISKFKTESVMNFFSENDNHDSYNVNNVDTYNRNNLKIENMNLDAENDINPDNVNNLDTNKINKLEAEILNTLKSNEESFDASTFNSNVQANFCNDISDSVSPISILVQKDKVVNLKSEKINSTKSKNIEINMSSKKLSRHLNEENWKRVVLTEDEALKEFRRKADDPKYLDATFKCTDCFKGFSKKNMLNRHILSRHSELGGVECRFCRMRFKWKCQLRKHIMQHYTKYVCLLCNFVFHSDASALLHEEYHSGTTKKCEYCDEEFRHVTTYYTHMRTHRSAHVCVRCGASFVSRAGLRQHARIKHPDELFDSLSSESEEDGRESYCPRCDLRFHSSRAHTEHLFHSDMHTEGIKKEDDAPATRKIMGKKLREKITKELRKRKPDLDTLTPVKNKRRRILKRKHRKPSTCYQCGMEFATQAACMKHHLAAHPRTSFHSPLDRHICELCGASLAPGSVAMHQNMHSRETVHTCDTCGRQFHSAVGLKRHLVTHTGEKPFACSLCEKRFTQSNSMKLHYKTFHLKQPYPKRIRKKKKDQPNQSTEQDDTYEESDSVPEAAAPEVPEIHAPPEVPAILQVVGENGTSLEEENMHYLTLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -