Basic Information

Insect: Biston betularia
Gene Symbol: -
Assembly: GCA_905404145.1
Location: FR989888.1:5731200-5738903[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00097 0.078 14.1 0.5 3 23 267 288 265 288 0.97

2 8 0.0076 0.61 11.3 2.5 1 23 293 315 293 315 0.98

3 8 1.2e-05 0.00098 20.0 0.8 1 23 319 341 319 341 0.98

4 8 0.045 3.6 8.8 0.0 3 23 356 377 355 377 0.96

5 8 3.7e-05 0.003 18.5 1.0 1 23 381 403 381 403 0.99

6 8 5e-05 0.004 18.1 0.2 2 23 437 458 436 458 0.97

7 8 0.022 1.8 9.8 1.4 1 19 464 482 464 488 0.87

8 8 0.62 50 5.2 0.5 2 23 493 515 493 515 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00097	0.078	14.1	0.5	3	23	267	288	265	288	0.97
2	8	0.0076	0.61	11.3	2.5	1	23	293	315	293	315	0.98
3	8	1.2e-05	0.00098	20.0	0.8	1	23	319	341	319	341	0.98
4	8	0.045	3.6	8.8	0.0	3	23	356	377	355	377	0.96
5	8	3.7e-05	0.003	18.5	1.0	1	23	381	403	381	403	0.99
6	8	5e-05	0.004	18.1	0.2	2	23	437	458	436	458	0.97
7	8	0.022	1.8	9.8	1.4	1	19	464	482	464	488	0.87
8	8	0.62	50	5.2	0.5	2	23	493	515	493	515	0.96

Sequence Information

Coding Sequence: ATGGTTGAACCCTTGAGCTCGAAGAATCTGGTGAAACATATTGCAAACGGGCGACTCGCTGAATTATGTTTACTATGCTTAATTCCACTGAAAGATATTTCCTCTGAGAGCGTATTTACTTTGATATGTAAAGAAGAAACAGAATATTGTATTGCTGATGCTCTGGAAGCAGTATGCCAATTTGAGCTCCATAGATTGGAAAACTACAACGTTTGCATAGATTGTTTCAAAGCGGCTTCAGAAGCATACAAATTTCATCTTCAAGCCAAACGAAGCATGGAACTCATTACACACTACACACAAGAATTATTTAACAACATAAAAAATATTGAAATCACTACTGAAGACATGGAGAAGTTACTTTTTGTTCCGTTAACTGAATACATACCTACAACTATTTTATTTGACTACAGTTTAGAAGGTATTGGCAGAAACAGTTCAAAAGATGGGAGTGTAGGTAATGACAATTTCTCTCGCATTAGCTGCCTAAGTGAGAATATTTCAGAAGATGTTGGCAGCTCGGTAGATCAGAAAACTTGTGATCAGATTGCCAGTAAAGTTGACAGCTATACTATGAATGACAATGACAATGGTCGTAATGATAATTTTGATGAAATTGAAGCAGACTATATCAAAAATACAGAAGAAAATATCCTCATAGTAGTAGAGAAAGAAACTCAATTACTTGAAGAGAATGTGGATTCCACCTATTCAATGCATTCTTCGGATGATGAAATTGTGATGATTGTGAATGAGAAGAAGGTTAGGAAGAAACGGGATCCGATGATTTACATGGCATGCAGTCAGTGCCCTATAAAGTACAGATTTGTGTCCAAATTGAAAGATCATATGAAAACTGTGCATAATATTGATCTTTATTATTGTAAGATTTGCAAGATAATTACGGAACACAAAAAAGAGTATGAAGAGCATTTGAAAAGTCACACAGACAAACATCAATGTACAATCTGTAATATTGTGTACAAGAAAGCAGACACTCTTATGGCACACATGAAGCTACATGAAAAGGGGAACCAACCTGAACAGTCAGAATCGGCGAACATATGCGAGCAGTGCGGCGTGATTCTGGAAGACGAAGCGAGTTTAGAAGAACACATGAGCAGTAAACACGTGAAGCGGTACACGTGCTATTACTGCGGGCGCATGTACCGCGGGGAGGGCAGCTTCGAGAGCCACATACGGAAACACGAGGAGTACTGGGACAAGAAGCAACGTTTGAAGCCTGATGAAGCTAGTAGCACGCAAGGTGACACGCAAGCAAGTAAGCAAGACCGAAACACCCGCTCTGTGTGCCAGACCTGTGGGAAGGACTTCGTGGACGAGCGGTCTCTGCTGTGGCACCAGAGACTGCATAGCAACGATCGACCATACACCTGTGAAATCTGCGGACGCGGTTTTGTCAGCAAGAACCGTCGTAACCAGCACTCGCTGTGCGCGCACACGCCGCCGCAGCGGCGCTGCCCGCTCTGCCCCGCGCTCTTCCACCTGCGCTCCATGGTCAACACGCACGTTAAGAAGGTACATCTGAAGGCGCACAAGCGTCGCAATCGTTCTTCGAAACACCAGAACGTGTACTGGCGCACCCAGGCCGTGCCCATTCAGGAGCTCAGCATCGACGTGCAGAACGACGTCCTCGAGCTGAAAGCTGCGCAGGACGAGATCAGCTCAAGCAATGTACTTGACAACGTCAACGCGAAACCAGATCAATCTCTGGCTTATGATAAATTTCACGATTTCGTGCGCACTCCGTTTACTATTGACAAATAA
Protein Sequence: MVEPLSSKNLVKHIANGRLAELCLLCLIPLKDISSESVFTLICKEETEYCIADALEAVCQFELHRLENYNVCIDCFKAASEAYKFHLQAKRSMELITHYTQELFNNIKNIEITTEDMEKLLFVPLTEYIPTTILFDYSLEGIGRNSSKDGSVGNDNFSRISCLSENISEDVGSSVDQKTCDQIASKVDSYTMNDNDNGRNDNFDEIEADYIKNTEENILIVVEKETQLLEENVDSTYSMHSSDDEIVMIVNEKKVRKKRDPMIYMACSQCPIKYRFVSKLKDHMKTVHNIDLYYCKICKIITEHKKEYEEHLKSHTDKHQCTICNIVYKKADTLMAHMKLHEKGNQPEQSESANICEQCGVILEDEASLEEHMSSKHVKRYTCYYCGRMYRGEGSFESHIRKHEEYWDKKQRLKPDEASSTQGDTQASKQDRNTRSVCQTCGKDFVDERSLLWHQRLHSNDRPYTCEICGRGFVSKNRRNQHSLCAHTPPQRRCPLCPALFHLRSMVNTHVKKVHLKAHKRRNRSSKHQNVYWRTQAVPIQELSIDVQNDVLELKAAQDEISSSNVLDNVNAKPDQSLAYDKFHDFVRTPFTIDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00207318;
90% Identity: -
80% Identity: -