Bbet023162.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989890.1:3901704-3907020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.4 3.5e+02 2.6 2.4 3 23 58 78 56 78 0.95 2 15 0.54 43 5.4 1.3 2 17 106 121 105 128 0.83 3 15 0.13 11 7.4 0.6 2 23 149 171 148 171 0.96 4 15 1e-06 8.3e-05 23.4 1.3 1 23 176 199 176 199 0.96 5 15 1.3e-05 0.001 20.0 1.3 1 23 203 226 203 226 0.95 6 15 0.045 3.6 8.8 0.7 2 23 229 251 228 251 0.94 7 15 0.0014 0.12 13.5 3.1 1 23 362 385 362 385 0.93 8 15 0.58 46 5.3 0.5 3 23 416 437 414 437 0.92 9 15 0.0025 0.2 12.8 0.2 1 23 458 481 458 481 0.95 10 15 0.015 1.2 10.4 0.5 3 21 489 507 488 508 0.94 11 15 3.5e-05 0.0028 18.6 0.7 1 23 516 539 516 539 0.92 12 15 0.084 6.7 8.0 0.5 2 23 545 567 544 567 0.95 13 15 0.00066 0.053 14.6 2.6 1 23 571 594 571 594 0.97 14 15 0.00011 0.009 17.0 2.2 2 23 601 622 601 622 0.95 15 15 2.6e-05 0.0021 19.0 0.8 1 23 628 650 628 650 0.98
Sequence Information
- Coding Sequence
- ATGGTCATCTTGTTGGCGACCGGCCTCGTGCTCTCTTTCCTTCGGGATTATTTCTTTTCAGATGTAAACCCCAATCGGATAGTGTTACCGATAGAGCAAAGACGCCGGAACCTCGAGGTTTTGTTCAACAATGCAACAATCGTACCATTTAAACATCGCGGACAGTGTTTATGCTTTTTCTGCGGTTTAAAAATGAAAGATAGGCAGCAGTTGATCGATCACAATCAGATGCACATACCTTGTAACACCAAACATAACTCTTTGAAGGCGTTAAACGCATCGGACTTCGAAATCAAAATTGACGTGTCCGAAATACGATGCAAAATATGTTCGGAACATTTCAACAATATTTACAATCTAGGATTCCATTTGGCGCATAAGCACAAACTTGATTATGATTTGTGTATAGGAACTTGTTACGTCGGTTATAGATTGATTGACCTGAAGTGTGTTGTGTGTTTTAAACAGTTAAAATCTTTGAGGGGTCTTATCCAACATACTAACAAGGAGCATCCCGTGAATTACTTCGAATGTGATGATTGCGGTAAAAGATTCAGAAGAAAGCACGACTTGATGGGTCATATAAATCAGATACATAAAGAGGAATTCAAATGTCCGAAATGTCCGGAGACTTTTAAATCGAAAGTAGAGTACACAAGGCACAAGAATGAAGACCATATTTCGCAATGCAACCTGTGTTTCCAAACGTTTTCATCGGCCACGTTGCGTTTGAACCATTTGAAGGGAGAGCATGACATCGCTCTGGGTGGCATTTGTGGATTCTGTCACAAGAAAATGAACTCTCGCTTCGCTTTTTTAGATCACGCTGGTAAATGTTCCGTCGGAGGTCCTGTGAACATTGAAGTGTCTCTAACACCCGTCAAGCCAGACATAGATACAGAAGTTCCCCTCGCAGTGACTGTAACAGTCAAGCCAGAGGTGGATGCGCCTTCAACTCCTGTCGAAGCAGAGACACTAACAGCCATGGCTGCAATGCGAGAAGCTAAAAAATTCGTAAGGAACAGTATCGCATATGTGTTCAACAACACCACCATCATTCCATTCAAGCGATACCACAATAGATTCAGGTGCTTTTACTGTCCAAAAGAGTTCAACAGTTGCAACGAACTCAGAAACCATTCAATGGAAGAACATCCCGTTTGTGATGTAAAAGTAAAAAGCATGAAGTTGAGCGGTTTAGGCTATCAATACATGTGGATAAAGGTCGACGCTTCGATATTGGCGTGTAAACTGTGTCGCTGCCAATACGAAGACTTGAGGAGCCTGTTGGCACATCTTGAATTAGTTCATGGCGCCCAACTCGGTAACTGCGCCGAAAAATTCTTACCTTTCAAACTGATCGACGACCAGTACCCTTGTCCACAATGTGGTGAAGAATTTTCGAGCTTCGGCAACACTTTGATCCACTTCAATAAGGAACATAACACAGAGAACAGAGTATTGTGTGTGACATGTGGGGAATCTTTCCATAATTTAACCTCACTTCAGATACATAGAAATCGCTGCAATGTAACACCGGACCGCTTCAAATGTAATAGATGCGATGTCGGATTTTATAACAAAAGTCAATTGACTAGACATTTGGGTTTGGCGCACAAAAAGAAAGTCTTGAAATGTCCTAATTGTACGGAGTTGTTCTCGTCCGAACATGCCAAAATGGTGCATATTATTAAAGAACATAAAGGCGGTCACAAGTGCACTTATTGTGATGCTTCTTTCATATTTCGCTCGCGGTTGATCCAACACGTTAAACGGTTGCATCTTCTGGAGAAAAATGAGAGGTGCACATATTGCGATAAAACGTTTTTCGACCAACGCAGATTGAAAAATCATATGGTCTTGCATACTGGGGAAAGGGCATTTAGTTGCGATTATTGCGAGAAGACATTTTCGTGGAAGAAGAACCTGATAAGCCACATTAATGTGCATTTGAAGAACGCAGATATACATACCTTCTTGGAGGATGAATACCGCATGACGGACATCGCTGATGAGTCGTCGCCTGCGGGCTCATCCGGCTCTCAGGGAAGACCCCGAACATCGCGCCGAGTTTGGGATCGGCGACCGGTGCATCAGCCTGCACACCGTTTTGCCGCAGCGCATTCAGAGGCTACCTGCCACTATTGTAAGGTATCGCACCATACCATTGCAAAATGCGCGTCCTTTCTCGCTTTGCACGTTAGTGCGCGACGCCGCATTGCCAAGGGTAGACGCCTATGTTTTACTTGCCTCGGGAATCACTTCCAAAGAGAATGCCCCAACCCCCATAACTGCGCACATTGCGGAGGAATGCATTTGAACATTTTGTGCGCTATCGCGGGGGGCATGAAACGCTTGGACGAGCCAAGGGGCGGGTACGAGTACCGTAGTCGGGGATCTAGATCCTTGAACTGCCGCTTGGATGATCGTTCCCCACCAAATCCGAAACGACAATATCGCCCGTCGCCACCGCCGCGCGACGCATTTTGTGCGATATCTCGTCGCTCGCCAACTATGCGCTATAACCCGTCGTTATCTCCCCCGTTAGCTGAACATCCGCGCATGGAGGCTCGCCCGCCGCGCTACGGGCGGGTACAGCACTATGATCATCCGCCAGCTATGGCGCGTCCATCAAGGTACCGAGCCACGGAGAATTTTGAACCGTATCCTACATTGAAGCGACCGCCCCCGCGCCGGCGCTAG
- Protein Sequence
- MVILLATGLVLSFLRDYFFSDVNPNRIVLPIEQRRRNLEVLFNNATIVPFKHRGQCLCFFCGLKMKDRQQLIDHNQMHIPCNTKHNSLKALNASDFEIKIDVSEIRCKICSEHFNNIYNLGFHLAHKHKLDYDLCIGTCYVGYRLIDLKCVVCFKQLKSLRGLIQHTNKEHPVNYFECDDCGKRFRRKHDLMGHINQIHKEEFKCPKCPETFKSKVEYTRHKNEDHISQCNLCFQTFSSATLRLNHLKGEHDIALGGICGFCHKKMNSRFAFLDHAGKCSVGGPVNIEVSLTPVKPDIDTEVPLAVTVTVKPEVDAPSTPVEAETLTAMAAMREAKKFVRNSIAYVFNNTTIIPFKRYHNRFRCFYCPKEFNSCNELRNHSMEEHPVCDVKVKSMKLSGLGYQYMWIKVDASILACKLCRCQYEDLRSLLAHLELVHGAQLGNCAEKFLPFKLIDDQYPCPQCGEEFSSFGNTLIHFNKEHNTENRVLCVTCGESFHNLTSLQIHRNRCNVTPDRFKCNRCDVGFYNKSQLTRHLGLAHKKKVLKCPNCTELFSSEHAKMVHIIKEHKGGHKCTYCDASFIFRSRLIQHVKRLHLLEKNERCTYCDKTFFDQRRLKNHMVLHTGERAFSCDYCEKTFSWKKNLISHINVHLKNADIHTFLEDEYRMTDIADESSPAGSSGSQGRPRTSRRVWDRRPVHQPAHRFAAAHSEATCHYCKVSHHTIAKCASFLALHVSARRRIAKGRRLCFTCLGNHFQRECPNPHNCAHCGGMHLNILCAIAGGMKRLDEPRGGYEYRSRGSRSLNCRLDDRSPPNPKRQYRPSPPPRDAFCAISRRSPTMRYNPSLSPPLAEHPRMEARPPRYGRVQHYDHPPAMARPSRYRATENFEPYPTLKRPPPRRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -