Bbet019799.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989892.1:250748-254744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00057 0.046 14.8 2.3 1 23 102 125 102 125 0.95 2 10 0.0001 0.0083 17.1 4.0 2 23 133 155 132 155 0.94 3 10 0.25 20 6.5 5.3 2 23 163 185 162 185 0.95 4 10 4.8e-05 0.0038 18.2 3.0 2 23 193 215 192 215 0.96 5 10 0.00059 0.047 14.8 5.3 1 23 222 245 222 245 0.93 6 10 0.004 0.32 12.2 6.2 1 23 251 274 251 274 0.94 7 10 4.6e-05 0.0037 18.2 0.3 2 23 282 303 281 303 0.97 8 10 0.0035 0.28 12.3 2.3 2 23 311 333 310 333 0.96 9 10 4.9e-05 0.0039 18.1 4.0 2 23 340 362 339 362 0.96 10 10 9.3e-06 0.00075 20.4 3.5 1 23 372 394 372 394 0.98
Sequence Information
- Coding Sequence
- ATGGAAAATGTATACAAAATGGACTTACAAATAAAGCAAGAGACGACTGATGTGACACCAAACATGGTGAAAGAAGAACCGATCGCAGAAGCAGCGAAGGCATCCCTCCCACCTCCTTCTATCCCCACTCTAAATTCGTTCCCGCCACCCAATGCATTCAGCTCATACCAACCTACTACATCGGACGGCATAATGAAGTTTATATCTGTGACGAGTGATATATTGACAGATGAGCAGAGAGAGATGTATGAGTCTGTGTTGAATACTTGGAAGCCTGCATTGTATCCGAAGCAGTATAAAAGATACATCTGCCAGAAATGCAGCAAAGAATTCAAGAATTACCAGAACCTGTATCTCCATACAACACGGGTTCATTCCACTGAAGACTCGGCAGTCATGTGCAACCAATGCGACAAGAGCTTTAAGAACAAGCATTATTTATACATGCATCGGATGAACAAACACTACTCGGAATCGGAGAAATGCTACTGTCAGTTTTGTCTCCAAGAGTTCCGTACACGGAGAGCATTACATATGCATGTGAAAAGAATTCACCCCACTACACTACCAGAAATCAAATGTCAAGAATGTGGCAAAGAGTTCAACGTACCATACAAACTGAGACATCACATAGAGAGATGTCACAAGGCAGATAGGGAGAAACACAAATGTCATATATGTCTGAAAATGTATAAGACTAACTTAAATCTACAACGCCATTTGCTGTTTCAACACACTGAGATTGAGAGGCATCAGTGTGTTTTCTGCCCTATGACGTTCAAATCGAGGCACCATATGAAGCGTCATGTTTTGAATATACACCCCCCATTAGAATCCAAAGTGCAGTGTCCGGAATGTTTGAAAGAGTTTAAAAATGATCAGTACCTGAAAGAGCATATGCAAGTACACTCATCGCCGGATACTAAAGTGAAATGCGAGTTGTGTGACAAAATCTTTCATTCGAGCCTCCGTCTCAAAAAGCATAAGAAAATAGTGCATCCGACAAAGCCAAAACTACGTTGCGATAAGTGCGACAAAGAGTTTGCTCATGAGCATTATTTGAAGCGGCACTACAACTCGGTGCATGTCGACATCGATGAATCCAACTACGAGCATGAGTGCCCACAATGCGGTAAAAAGTTCAAAATTAAAAAGTATTTGAACAATCATTTGCAACGACACGAGCAACAACATCTGAAAAGAATTTCGTCATTAGTTAAGACAGTGATAGGAGATGAGAAAAAGAAGAAGAGAGCCCCCATGAAAAGAGGGCGGAAGAAACGTGCCGAGATTGAGTTTATAAAATGTGAACCTGTGTCTAGTTCTGAAGAATCTGACAGTGAAAGTGAAAGTGAATCTGAGTGA
- Protein Sequence
- MENVYKMDLQIKQETTDVTPNMVKEEPIAEAAKASLPPPSIPTLNSFPPPNAFSSYQPTTSDGIMKFISVTSDILTDEQREMYESVLNTWKPALYPKQYKRYICQKCSKEFKNYQNLYLHTTRVHSTEDSAVMCNQCDKSFKNKHYLYMHRMNKHYSESEKCYCQFCLQEFRTRRALHMHVKRIHPTTLPEIKCQECGKEFNVPYKLRHHIERCHKADREKHKCHICLKMYKTNLNLQRHLLFQHTEIERHQCVFCPMTFKSRHHMKRHVLNIHPPLESKVQCPECLKEFKNDQYLKEHMQVHSSPDTKVKCELCDKIFHSSLRLKKHKKIVHPTKPKLRCDKCDKEFAHEHYLKRHYNSVHVDIDESNYEHECPQCGKKFKIKKYLNNHLQRHEQQHLKRISSLVKTVIGDEKKKKRAPMKRGRKKRAEIEFIKCEPVSSSEESDSESESESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00896204;
- 90% Identity
- iTF_00033187;
- 80% Identity
- -