Bbet023245.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989890.1:4428577-4430904[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.7 5.4e+02 2.0 0.1 2 23 78 100 77 100 0.90 2 15 0.00046 0.037 15.1 0.5 1 23 121 143 121 143 0.94 3 15 0.004 0.32 12.1 0.2 1 23 147 169 147 169 0.95 4 15 0.002 0.16 13.1 0.8 1 23 209 231 209 231 0.97 5 15 0.17 13 7.0 0.1 2 23 258 280 257 280 0.94 6 15 0.0019 0.15 13.2 3.0 2 23 330 352 329 352 0.95 7 15 0.092 7.4 7.8 1.0 2 20 458 476 457 480 0.85 8 15 0.019 1.5 10.0 0.6 1 23 501 523 501 523 0.97 9 15 0.0064 0.51 11.5 3.1 2 20 528 546 527 549 0.91 10 15 0.00059 0.047 14.7 5.1 1 23 556 579 556 579 0.98 11 15 0.0027 0.21 12.7 1.8 1 23 584 607 584 607 0.92 12 15 0.0025 0.2 12.8 1.2 1 23 613 636 613 636 0.96 13 15 0.0022 0.17 13.0 3.7 1 23 642 664 642 664 0.97 14 15 3e-07 2.4e-05 25.1 0.1 1 23 670 692 670 692 0.99 15 15 0.00064 0.051 14.6 5.5 1 23 698 720 698 721 0.96
Sequence Information
- Coding Sequence
- ATGGGGGACTATCGTGATGCGCGTGACAATGCCACCATTATCCTTGCCTGTTCCAACGTGTGCCCCTTCAAGTGGTACCGGAACGTGTTCGGCTGTCCGAGCTGTAGCTACACCTCGCCAGTGTTCGCCTGCCTCAAAAACCATTCTATCAACCATCCAATCGCAGACAAACTTGACATTCTTAAGCATTCTAGACCGGGCGATGCTGTAAAAACTGACGTCACAAATCTCAGATGCGATCTTTGCATGCAATACGTTGTCGATTTATCCACCTTAATGGATCACCTTCTAGAAGTTCACGATAAACCGATCGCAAAGAAATACGATTCCGGTATCCTGCCTTATATGTTGGATAAAGGTTTCACGTGCGCGTATTGTGGTGAAACATTCGAACGGTTCGTGATGTTAAACACTCACGTGTTCGAACATTTGCCTAAATTCGCTTGCGACGAATGCGGTCTCTTCTTCTCCCCGGATAGGCTCAGGAAGCACGTTCTAAGAATTCACGAGAAAACTCGCGAAATAAAATTTAAGCAGAAATCGGGCGAATATGACGCTAGGCACAACGCAACTATCATATTGGAATGTTCCAACGTTTGTCCTTTCAAATGGAAACGGAATATGTTTGCTTGCGCGTACTGCCCCTTCACGTCACCCGATTTTACCAATTTGAAAATACATATGTGTGTTCACCCGGAAAAGGTAGACAGAATCGAAATACTTCGCAATTCGCGACCCACCGACATTGTTAAAACGGACGTTACCAGTCTTAAATGCGATTTGTGTGAGGAAGATGCCGAAAATCTAGGATCACTTATGCGTCACCTTAAAGATGAACACGATAAACCCATTATGAAAAAATATGGTTCGGGCATCGTGCCTTATTTATTAGTGGATGGATTCAAATGCGCTTACGGTTCTTGTAGCGAGTCATTCGATTGCTTTATAAAATTAAACACACATGTCAAATTGCACAACATTAAGTGTTCGTGCACTCAGTGCGGGCAATTTTTCTCCGGCAGCGAAAGGCTAAGGAGCCATATGATCAGAAAACACGGTCAGCACAGAGCGGCCAAAATAAAATCGACACTCGACCCAAAACCAAAAGTATCTCGCAAACTAGGCTTACGGAAAAAATCATTACATAAAGGCGTATACGATGACGCCAGGCATAATGCCTCTATTATCGCCGAATGTTCAAACGTCTGCCTTTTCAAATGGCATCGGAACGCATTCGGATGTGCTAGTTGTGATTATATATCAGCTGATTTTGGTCCGATCAGGGATCACGTTCAAAACGATGGTTGCATAAATCTGCACTTGCGATATTCTCGCCCCACAGATATACTAAAAGCTGAGATCACAGATCTGAAATGCAAGCTTTGTGAAGAAGCTTTCAAAGATTTGAGCACGTTGCTCTGCCATTTAGGCCAATTACATGATAGGCCGATCAAAACAGAATACGGGGCCGGTTTGATTCCTTACCTCTTAAGCGATGGTTACACGTGCGTAGAATGCGGAGTGGAATTCGATCGTTTCACAAAATTGAATTTTCACATGAACGAACATTTTCCCAATTGCGTGTGTTCTTATTGCGGGCAAGCTTTTACGAGTGCCAATAGATTGAAACACCATACTTGGCAGCATAAACAGGAAAAAGTTAAATTCAAATGCTCCCAGTGCGAATTGGTCTTCACGACCAGGCACCAAAAGCAAAAACATATGATGTCGAAACACGGCACGTATTCCCACAAATGTCCGTACTGCAATGAGGTGTTTAAATCGTACACGCTTAGGTTGCAGCATTTGAACGACGAGCACGGAAAGAACATAGAGTACCCATGTAAATTATGCTCAGAAGTATTCAAAACTGCATCCAGACGAGCGAGGCATGTTAGACACATTCATATAAGAAACAAACCCCATTCTTGCTCCATCTGCAACTACTCATGTATGACCGGAGCCAGCTTGAAAAGGCATATGATAAGACACAGCGGAGAGAGGAAGTACAAATGCAAAATATGCCCGAAAACTTACCCTAGAAGTGGAGCTCTCGCTTTGCATATGCGAATACACAACGACGATAAAAGATTTGTGTGTGTGCATTGCAACGCCGCGTTTATACAAAAATGTAGCCTTAAAAATCACATCAAATCTCATCATCCGCATGAAGTTGAAGAGCCTTCTTCGTCTGAAAATACGGCACCGCTCACCACAGACACACTCAACACAGACACAATCACCATAGATACACTTACCATGGAGCCACACATGTTTGATAGTGAAACCCCAGTATTAATATTGGAGATAGATCACCAGCTGATGTAA
- Protein Sequence
- MGDYRDARDNATIILACSNVCPFKWYRNVFGCPSCSYTSPVFACLKNHSINHPIADKLDILKHSRPGDAVKTDVTNLRCDLCMQYVVDLSTLMDHLLEVHDKPIAKKYDSGILPYMLDKGFTCAYCGETFERFVMLNTHVFEHLPKFACDECGLFFSPDRLRKHVLRIHEKTREIKFKQKSGEYDARHNATIILECSNVCPFKWKRNMFACAYCPFTSPDFTNLKIHMCVHPEKVDRIEILRNSRPTDIVKTDVTSLKCDLCEEDAENLGSLMRHLKDEHDKPIMKKYGSGIVPYLLVDGFKCAYGSCSESFDCFIKLNTHVKLHNIKCSCTQCGQFFSGSERLRSHMIRKHGQHRAAKIKSTLDPKPKVSRKLGLRKKSLHKGVYDDARHNASIIAECSNVCLFKWHRNAFGCASCDYISADFGPIRDHVQNDGCINLHLRYSRPTDILKAEITDLKCKLCEEAFKDLSTLLCHLGQLHDRPIKTEYGAGLIPYLLSDGYTCVECGVEFDRFTKLNFHMNEHFPNCVCSYCGQAFTSANRLKHHTWQHKQEKVKFKCSQCELVFTTRHQKQKHMMSKHGTYSHKCPYCNEVFKSYTLRLQHLNDEHGKNIEYPCKLCSEVFKTASRRARHVRHIHIRNKPHSCSICNYSCMTGASLKRHMIRHSGERKYKCKICPKTYPRSGALALHMRIHNDDKRFVCVHCNAAFIQKCSLKNHIKSHHPHEVEEPSSSENTAPLTTDTLNTDTITIDTLTMEPHMFDSETPVLILEIDHQLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207238;
- 90% Identity
- iTF_00207238;
- 80% Identity
- -