Bbet023248.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989890.1:4439882-4441437[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.5e-05 0.0044 18.0 2.1 1 23 56 78 56 78 0.98 2 10 3.2 2.5e+02 3.0 2.5 3 23 107 128 107 128 0.95 3 10 0.0017 0.14 13.3 3.6 1 23 149 171 149 171 0.98 4 10 0.00049 0.04 15.0 0.2 1 23 175 197 175 197 0.94 5 10 0.0027 0.21 12.7 0.3 1 23 202 227 202 227 0.94 6 10 0.00063 0.051 14.7 1.8 1 23 233 256 233 256 0.97 7 10 1.7e-05 0.0013 19.6 0.1 1 23 263 286 263 286 0.98 8 10 0.00059 0.047 14.8 0.6 1 23 292 314 292 314 0.97 9 10 1.4e-06 0.00012 23.0 4.1 1 23 321 343 321 343 0.98 10 10 2.8e-06 0.00023 22.1 0.3 1 23 349 372 349 372 0.98
Sequence Information
- Coding Sequence
- ATGAATGGTATTGATGAGAACCGAAAAAGCAGTATTGATGATAAAGAAACTAAAAGGACCGCTGCGAACACGAAACAAACAGAAGATATCGCAGCGAGAAAAAAACGAGCTTATACACTACTAGAATGCTCTAGAATATGTCCGTTCAGGTGGATGAAGAACCTATATTTCTGTTTCTATTGCGAGGCACAGTTCACAGACCCGGCGGAGTTAAGGAAGCATCACAACACACACGTCACCATCACACCCGCACTACAGACCAACGGCACGAGGCTTAAAAAACACGAATTGATCAAAGTAGACATAACCGACGTCGGCTGCAAGCTTTGCGATGACACCATACATGATTTCTATGATCTCAAGTCACACTTACAGAAAAAACACAACAAAGACATCCACCCAACATCCGATGGCGTCTTACCGTTCAGGATAACTAAAGACTGCTTCAAATGCGCACTATGCGACAAGATATGTGATGAATTCAAATCGCTCAATCACCACATGAATGTGCATTACCAGAACTTTATATGCGAGCAATGCGGCACGGGATTCGTCACACCAGACAGGCTGAGGGTCCACTCCTTCTCACACGAAACTGGGGCTTTCAGATGCGACGCGGACGGCTGTGAGAAGATCTTCCGTTCAAAAAACAACAAAAACGAACACTACGCTATAGTCCATATGAAAAGAAAGAGACACAGATGCCCTCAATGTCCAGAGACCTTCATAAACTACTTCCAGAGATCCAAACATATTTCCACAATCCACGGAGTAAAGCTGAAAGAGTTCAAATGTGACTTGTGCCCTAAAGTTTTCACTTTAAGCGGCAAGCTCGGGGCTCATGTTCGGACGGCTCATATGAAGATGAAGAGATTCAGCTGTGAGGTTTGTTCGTGGAAGGTCTACTCGAGGACGGAGTTGAAACAGCACATGGTGAAACACGTCGCGGTCAATAAGAGGTTTCAATGTCACAATTGCAAGAAGAGCTACGCAAGGGAGTACAGTTTGAAACAGCATATGAGGGGTCATGAGAATGGCAGGCGTTACGTCTGCGGAGCTTGCGGGAAGGTTTTCGTTCAAGCGTTCAGCCTGAATAGACACACAAAGACGTATCACCCGGACATCCGAATCGCGGTATCTGAGAATGTCTGA
- Protein Sequence
- MNGIDENRKSSIDDKETKRTAANTKQTEDIAARKKRAYTLLECSRICPFRWMKNLYFCFYCEAQFTDPAELRKHHNTHVTITPALQTNGTRLKKHELIKVDITDVGCKLCDDTIHDFYDLKSHLQKKHNKDIHPTSDGVLPFRITKDCFKCALCDKICDEFKSLNHHMNVHYQNFICEQCGTGFVTPDRLRVHSFSHETGAFRCDADGCEKIFRSKNNKNEHYAIVHMKRKRHRCPQCPETFINYFQRSKHISTIHGVKLKEFKCDLCPKVFTLSGKLGAHVRTAHMKMKRFSCEVCSWKVYSRTELKQHMVKHVAVNKRFQCHNCKKSYAREYSLKQHMRGHENGRRYVCGACGKVFVQAFSLNRHTKTYHPDIRIAVSENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207209; iTF_00827280; iTF_00034045; iTF_00033176;
- 90% Identity
- iTF_00207209;
- 80% Identity
- -