Bbet014565.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Biston betularia
Gene Symbol
-
Assembly
GCA_905404145.1
Location
FR989888.1:701821-731053[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.38 31 5.9 0.8 1 23 393 415 393 415 0.93
2 11 0.0013 0.1 13.7 8.2 1 23 430 452 430 452 0.98
3 11 1.2e-07 9.4e-06 26.4 0.6 1 23 458 480 458 480 0.99
4 11 0.00094 0.075 14.1 2.7 1 23 539 561 539 561 0.99
5 11 0.00016 0.012 16.6 0.7 1 23 567 589 567 589 0.93
6 11 6.1e-06 0.00048 21.0 0.3 3 23 597 617 595 617 0.98
7 11 3.8e-05 0.0031 18.5 0.9 1 23 623 646 623 646 0.95
8 11 4.6e-06 0.00037 21.4 2.0 1 23 652 675 652 675 0.95
9 11 0.0002 0.016 16.3 0.9 2 23 682 703 681 703 0.97
10 11 3.2e-05 0.0025 18.7 2.5 1 23 709 731 709 731 0.97
11 11 0.00027 0.022 15.8 0.2 1 21 737 757 737 758 0.96

Sequence Information

Coding Sequence
ATGGGCGATGATTGTCTGAATGTTTTGCCCAGCAGTAGAACACTCCTGGAGACTTTACAAGAAATCCTCAGTAAGAATTTGGACGAAAAGGATATTCATTCCAAGGCATTATGTAAGAAATGCATCAAGACTTGTGTGGATTACGACGAATACAAGGCCAAAATGAACATAATTAGAATGGATATGTGCGAGGAATTTAACACAACCATCCACACTACCATACGAAAAACTCCAAGCAAATTGAGTGGTAAAGAGGAGAGACCTATGGGGACCATAGTACTCACTCAGAGTGTTAAGACGTCAAGTGTCAAAATTAACATTCCCGAAGACACGGCAGACACGAGCGTGATGTCAAATGCCAATAATGACATCACCAAGTCGTGGGATGTCAACATAATGCCAAAAGAAATATTTTCGACGCCAGAGGACGCTAGCCAGAATGATGATGAGTTAGTGCAAAGTGATGAGGAAAATGTTGAGAACGGTGATGAGGAGGAACGCGAAATGGAGATCGATGAAGACTGCGGTATGGCTGTGATGCCAGTGACCGTTGACACTGAAGACCCGTTTGACGGTATAAAGACAGAAGACGGCCAGTTGTCAAATTACACAGAGTATATAACAATAACGGAAGGTTCGGGCAAAATTGACAGCAACTATGTGTTTGGGAAACTGAAGATATACAACTCGCAGAACGGAGACGACGAACAACATACGATAGTGGTAGACGGTGATAACGCGTCAGTTCTGGAGATGATGACGGGCCAGAAAGTGATATATGAGAACGGAGGCCTGTCGCTGGTGATGGCGGACGATGATGCGGTCGAAGACGCCGCCAACGATGAAGAAGATGATGACGACGATGACGGACAAGAATCCAATGATGAATCTCAGATAGAGCTCCAGGTGTCTGGAGACGAGGAAACTGCCAACGCGATCATAGCGGCTGCTAAAGAACAAGGCGGGGCGTTTATAAAGGTGGAATCTGGCGAGATGTACAGGGTCAAGTCTGTACAGAGCGCGTGTGACGCAAACTACGTGGAGAGCTTGGTCAGCCAAGAGGGTGACCAGTTCCGATGCAACCTGTGTCCAACTCTGGTCACAAATGAACCCGTGAAGTTACTAGACGCGAGCGCAATGATGAGGCACCTGAAAGTGGAACACGACGCCAAGATATACCTGTGCCAGTTCTGCGGACGTATCATGAGGAAACGGACTGAATATACCACGCACCTAGCGGAACATTCTAGAAAGCCGCAGAGCCCGAAAGCGGGCCAGAAACGTCTCCACGAGTGCTCGCTCTGCAAGAAATGCTACACATCGCGCACACTACTACACGAGCACATGAACACGCACACGGGCACGCGCCCCTATCGGTGTGACGTCTGCGACAAGGCTTTCGCGAGCAAGTATACGCTTCAAGCACATCTTAAAACGCACCAGTGTCAAGTGTCAAATACAAAACGGGCGGGAAGAATGCGCGCGGTGCTCGGTACCGCCGCCGCCACCGCGCGCCCGCCTCTTGCGGCCTCTCGTGACGTGCTATACACGACCACGAGACTCGTGACGTTAGATTGTCAGATTCAGAGATTCTCGATGGTCCGGCCGCGCCCATTCAAGTGTCAACAATGCAACAAAAGTTTCCTTTCGGTGCAGAATCTCAGACAACACGAGAAAACTCACTCCGGTATCAAGAACTTCATCTGCAAATTCTGTAATAAAGCGTTCGGCACTCAACATAACTTGGAAATCCACGGCGTAGTCCACACTGGGGCGCGGCCCTTCGGCTGTCAGTACTGTGACAAAGCTTTCGCTCGCCGAGCGGAACTTGTCGACCATCGACGAACGCACACTGGCGAGCGTCCTTTCGCGTGCGAACTTTGTGGCGCTCGGTTCGCTCAGCGATCGAACTTGCACTCGCACCGTAGAGCGACCCACCTGCACGACAAGCGGCACCAATGCCCCGACTGCCCCAAGCGGTTCAAACGGAGAAGATTGTTGGAATACCACATAAAGGCGACGCACACTGGCGAGCGGCCGCTCAAGTGCGACGTCTGCCAGGCAACCTTTGTGTATCCCGAACATTACAAGAAGCACGTCAAGATACACTCCGGGATACGGCCTTACTTCTGCGAGATTTGCGGCAAATCGTTTAATTCCCGAGACAATCGTAACACGCACCGCTTCACTCACAGCGAGAAGAAACCCTACGAGTGTCTCACTTGCGGGCAATCCTACATGCGGAAACGGCTCCTCATCGCGCACATGAAATCTAGCGGTATCACCACCTTGGTGGAGGTGGATCAGCACGATGTCACAGAGCCAGACGACAAAGTTGAAGCTATATTCCGCACGTCGGGCAAATTAGAATCGTTGGACAAAACAGCGGTCATCACCAAATTAGTGACCGGCGACGGGAACAAGATATTTGTTAACTGTGATAACGATTTAGTTGCGGAAACGGAGGAAAACGCTTTAATAGAAGCTGTCAACTCCGCGCAAACGCAGGATCAAGCCACACATTTCGGAACTGATGAAAATGGGGCCGTATTGAGGTTGATCCAAGTGAAATTACCAGATGGAAACGATGGTTGGGTCGCCCTTAACGATTGA
Protein Sequence
MGDDCLNVLPSSRTLLETLQEILSKNLDEKDIHSKALCKKCIKTCVDYDEYKAKMNIIRMDMCEEFNTTIHTTIRKTPSKLSGKEERPMGTIVLTQSVKTSSVKINIPEDTADTSVMSNANNDITKSWDVNIMPKEIFSTPEDASQNDDELVQSDEENVENGDEEEREMEIDEDCGMAVMPVTVDTEDPFDGIKTEDGQLSNYTEYITITEGSGKIDSNYVFGKLKIYNSQNGDDEQHTIVVDGDNASVLEMMTGQKVIYENGGLSLVMADDDAVEDAANDEEDDDDDDGQESNDESQIELQVSGDEETANAIIAAAKEQGGAFIKVESGEMYRVKSVQSACDANYVESLVSQEGDQFRCNLCPTLVTNEPVKLLDASAMMRHLKVEHDAKIYLCQFCGRIMRKRTEYTTHLAEHSRKPQSPKAGQKRLHECSLCKKCYTSRTLLHEHMNTHTGTRPYRCDVCDKAFASKYTLQAHLKTHQCQVSNTKRAGRMRAVLGTAAATARPPLAASRDVLYTTTRLVTLDCQIQRFSMVRPRPFKCQQCNKSFLSVQNLRQHEKTHSGIKNFICKFCNKAFGTQHNLEIHGVVHTGARPFGCQYCDKAFARRAELVDHRRTHTGERPFACELCGARFAQRSNLHSHRRATHLHDKRHQCPDCPKRFKRRRLLEYHIKATHTGERPLKCDVCQATFVYPEHYKKHVKIHSGIRPYFCEICGKSFNSRDNRNTHRFTHSEKKPYECLTCGQSYMRKRLLIAHMKSSGITTLVEVDQHDVTEPDDKVEAIFRTSGKLESLDKTAVITKLVTGDGNKIFVNCDNDLVAETEENALIEAVNSAQTQDQATHFGTDENGAVLRLIQVKLPDGNDGWVALND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00207204;
90% Identity
-
80% Identity
-