Bbet018450.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- salm
- Assembly
- GCA_905404145.1
- Location
- FR989874.1:206762-210237[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.044 3.5 8.9 3.5 2 23 190 211 189 211 0.97 2 13 2.8e-06 0.00023 22.0 3.4 1 23 217 239 217 239 0.98 3 13 0.00011 0.0092 17.0 0.1 1 23 264 286 264 286 0.99 4 13 7.9e-05 0.0063 17.5 2.9 1 23 292 315 292 315 0.95 5 13 0.00014 0.011 16.8 1.3 1 23 324 346 324 346 0.98 6 13 3.6e-05 0.0029 18.6 1.6 1 23 352 374 352 374 0.99 7 13 5.2e-06 0.00041 21.2 0.9 1 23 380 402 380 402 0.98 8 13 1.8e-06 0.00015 22.7 0.6 1 23 408 430 408 430 0.97 9 13 9.1e-05 0.0073 17.3 0.4 2 23 437 459 436 459 0.95 10 13 5.3 4.2e+02 2.3 0.2 3 12 466 475 465 483 0.82 11 13 0.00082 0.066 14.3 2.2 1 22 489 510 489 512 0.91 12 13 0.062 5 8.4 0.1 1 23 518 543 518 543 0.91 13 13 5.3e-05 0.0043 18.0 0.6 1 23 549 572 549 572 0.97
Sequence Information
- Coding Sequence
- ATGGAATCCAAGATATGTCGTATTTGCCTCGACCGGACCGCCACGGTATCCGTGTTCGACAGTGCGGACGAGGTGAGGTACTGTGCTAAGATGATGAAGTGTGCGGACGTGGAGGTTGCGGAGGGAGACGGCCTTCCGGACTCGATCTGCGAGTGCTGCGCCACCCAGCTCACCGCGAGCTACGAGTTCGCGTCGCGCTGCGAGGCCTCTGACCGTGCCCTGCGCGAGCTCGACACGCTTCATGCTGCGCCACCCGAACTGCCTTCGACTGACCCCATCAAGGAAGAAATAAAACCTGAAAACTACTCGGATGTTTTCGAAGTTTTCGAGAATTACCTAGACGATGGGTTTGAAACTGACATTTCTAATATGATAGATGATGATCAAACAAACACAATTCCTAATATGATAGGCAATGTTCAAACGAACACAAAGAGCATAACAAGAAAAAAACCTAAGATATATTCTAATGGAAATAAAATTGGTAAATATGAATATAAGTACAGCAAAAAAGTTTTACCGAATCACATGCGCAAAAGGAAGATAAGGTTAAAAACGGGTCCCATTCAATGCTTGATCTGTGACAGAACACTATCTTGCCACTCGGCCTTCCAGCTTCACATGCGATCTCACACCAAAGAGAAACCATACTCCTGTGACATTTGTAAAAAATCATACGCATCAAAACACACACTGAAGAGGCACATACTGAGACATTATGGAATTATGGAGAATAAGAATCAAAAAAAAGATTGTGATAAGAGATGTAATCGTCCCAAACAAGCACCCTACCAGTGTTCCACTTGTGGTCAAATGGCTGTGAGTCGATCAGCGATGGAAGATCATATAAGAACCCACACGGGAGAAAAACCGTTCACTTGTGAACGCTGTGGGAAAAAATACAGGCTGAAGGGCACCTTACAACGGCACATGCATGGTTCACACCCAGATGTATATCCTGGCGTACAATTTGTATGCGAACATTGTGGAAAAATTTTCCATGCACGAGGCAGCATCATTACTCATATGCGAGTCCACACAGGGGCCAAACCTTACCAATGTTCTTTCTGCCCGGAGAGATTCCGCCAAATCTCATCCATGATCCGCCACAAGAGAATGCACACGGGTGAAAAGCCTTACAGTTGCCAGCAATGCGGGCGAATGTTCCGAGATCAGAGCTCACGGAACAAACACATAATTGTACATACCACTGAAAAAAAATTCAACTGTGACATCTGCAGCAAAAGTTTTAAAAGGAGAGCAGGTCTGAAAATTCATATCATCAGACACACCAAGGATAAGCCCTGGGTGTGCAGCTACTGTGGACTGCGTGTCACTACCAAAGGCAACCTGAAGACTCACACTGAGAGAATGCATTCTGAAAGGTCGGGCATATGCTCAGTGTGCAAGAGGCATTTCCCGGACGTGGCGGCGCACGCGCGCGTGCACACGGGCGAGCGGCCCTTCCGCTGCAAGATCTGTGAGCGCAGCTACGGCACAGCCCGCAGCCTCTCGCACCACATGGGCTTCAAGCACCGGAATGCAGCCAAGTTCAAGTGTGCGCTCGAGGACTGTACCCGATCGTTTCCGACGGCGGCGATGCTGGAGTTCCACGTGCTGAAGGTGCATGCGCAGAGCACGCCGTACGTGTGCGCGCACTGCGCGCGCGGCTTCATGCGCCCCTCCGACCTGTCGCGCCACCTGCGGCTAAACCACAGCGACACGCACACGCAGGTACGACACATTTCAGTTTCGGCGGGAACAACGCGGAAAGACTTGTCGCCCTGCACGACTCTTTCCGCGTCAAGTCGCACTACATCAAGCCGACCGACTGAGCTCGCCGCCTACTGCGCCGCCAGCGACCGCGGCGGGAAACTAGACAAACGGCTGGCGCGTACTCGGCGCCGCCCCGGCGACCATTCACAACCAGAACCTGGATCATGGAACGGGGTGCCATCACCAAAGAACGAATATTCACTATTCTATTGA
- Protein Sequence
- MESKICRICLDRTATVSVFDSADEVRYCAKMMKCADVEVAEGDGLPDSICECCATQLTASYEFASRCEASDRALRELDTLHAAPPELPSTDPIKEEIKPENYSDVFEVFENYLDDGFETDISNMIDDDQTNTIPNMIGNVQTNTKSITRKKPKIYSNGNKIGKYEYKYSKKVLPNHMRKRKIRLKTGPIQCLICDRTLSCHSAFQLHMRSHTKEKPYSCDICKKSYASKHTLKRHILRHYGIMENKNQKKDCDKRCNRPKQAPYQCSTCGQMAVSRSAMEDHIRTHTGEKPFTCERCGKKYRLKGTLQRHMHGSHPDVYPGVQFVCEHCGKIFHARGSIITHMRVHTGAKPYQCSFCPERFRQISSMIRHKRMHTGEKPYSCQQCGRMFRDQSSRNKHIIVHTTEKKFNCDICSKSFKRRAGLKIHIIRHTKDKPWVCSYCGLRVTTKGNLKTHTERMHSERSGICSVCKRHFPDVAAHARVHTGERPFRCKICERSYGTARSLSHHMGFKHRNAAKFKCALEDCTRSFPTAAMLEFHVLKVHAQSTPYVCAHCARGFMRPSDLSRHLRLNHSDTHTQVRHISVSAGTTRKDLSPCTTLSASSRTTSSRPTELAAYCAASDRGGKLDKRLARTRRRPGDHSQPEPGSWNGVPSPKNEYSLFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207191;
- 90% Identity
- -
- 80% Identity
- -