Basic Information

Insect: Biston betularia
Gene Symbol: -
Assembly: GCA_905404145.1
Location: FR989889.1:6170576-6175751[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 8.7 7.6 0.1 5 21 197 213 194 214 0.92

2 12 0.00085 0.068 14.3 0.3 2 23 239 260 238 260 0.97

3 12 0.00018 0.014 16.4 4.5 2 23 282 303 282 303 0.98

4 12 6.1e-05 0.0049 17.8 1.2 1 23 311 334 311 334 0.97

5 12 1e-05 0.00081 20.3 0.6 1 23 341 363 341 363 0.97

6 12 0.06 4.8 8.4 2.3 2 23 369 390 369 390 0.96

7 12 3.8e-07 3e-05 24.8 0.6 1 23 396 418 396 418 0.96

8 12 1.3e-05 0.001 20.0 0.5 1 23 424 446 424 446 0.99

9 12 1.6e-06 0.00012 22.9 0.3 1 23 452 474 452 474 0.98

10 12 0.00024 0.019 16.0 0.5 1 23 480 502 480 502 0.99

11 12 8.4e-06 0.00067 20.6 4.1 1 21 508 528 508 530 0.96

12 12 1.7e-05 0.0014 19.6 0.1 1 23 536 558 536 558 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	8.7	7.6	0.1	5	21	197	213	194	214	0.92
2	12	0.00085	0.068	14.3	0.3	2	23	239	260	238	260	0.97
3	12	0.00018	0.014	16.4	4.5	2	23	282	303	282	303	0.98
4	12	6.1e-05	0.0049	17.8	1.2	1	23	311	334	311	334	0.97
5	12	1e-05	0.00081	20.3	0.6	1	23	341	363	341	363	0.97
6	12	0.06	4.8	8.4	2.3	2	23	369	390	369	390	0.96
7	12	3.8e-07	3e-05	24.8	0.6	1	23	396	418	396	418	0.96
8	12	1.3e-05	0.001	20.0	0.5	1	23	424	446	424	446	0.99
9	12	1.6e-06	0.00012	22.9	0.3	1	23	452	474	452	474	0.98
10	12	0.00024	0.019	16.0	0.5	1	23	480	502	480	502	0.99
11	12	8.4e-06	0.00067	20.6	4.1	1	21	508	528	508	530	0.96
12	12	1.7e-05	0.0014	19.6	0.1	1	23	536	558	536	558	0.98

Sequence Information

Coding Sequence: ATGGAAGTAGATCAGAATTTCGATAAAATATGTCGCGCTTGTCTCTCTGAATCTAGCAACATGAAGTCGCTCTTTGCAAAACTTGAGGGCGGACAGCAGTTATTAGATTTGTTCATAATTGCTGCAAATATAGAAGTTAACAGCGAAGATGCACTTCCGAAGCAGGTTTGTGGTGACTGTGAATCATATTTGTACCAAGCGGATGAATTTAAACGCCGTTGTAAAGAATCTGAGATGATTCTAAAAAACTTTTGTTCAAACGCTTCCCATCCATATTTAGTTAAAACTGACCAGGAAACGGATGAAGATGATATAAAAATGCATAATTCCTGCCTTGAAAAATCTAATAGTTACGAAGACGAAACAGAAAAGCCCGATTTCCTAAGTTTGTTTGCCAACTCTGATGTTAGTTTTAAAAAGTTAGATACTTCTAAAATTAAGGAAACATGTGAAGGTGTGGTAGAAGCGGTGAAAACAGAAATAAGCATGGAATATGATAACATTGATTATACTGACAATTTTGATGATCGAGAGGAAAGCGTACCTCTTGAAACTGAAAACTTAAAAGAAGTAACAACATACAAATGTGTATGCGGAGAAGAATACAAAAGTAAAGAGAAACTCAAAGAACATGTAAAATTAAAAAGCTGTGTCAAAAAGGTTAGAATAAAAGACAAAAAATTCAAAACCTGTATTAAGATTAAGAATAAAATAGAATGTCCAAAATGTAATATAACATTTGATACAATAAATAAGTGGAATACTCATCAATTGACACATGTAAATGAAGTAACAAAAATTGCTAAACCAGCGCAAGAAGAGGAAGAGGAATTACCTAAGCCGCAGTGCTCCCTGTGTCTACGCAAGTTTAAGAACAAGAAGACATTGACAAAACATATAAAAAGACACGAAGCCAAAGATAATGTCAAATACATTTGTTCTAAATGTAAAAGAGAATTTAAATACAAGGCTTTTCTGGAAAGTCACATGTTGTCTGTTCATGCAAATGGTACAGATGGCTACACATGTGAAGACTGCCCTGAGAAATTCTCCACTCGGAAAAGTCTTGAAGTTCACAAGGACAGCCACAGAAAGAAAAAAAATTCCTGCCCATTTTGTAATAAATCATTCCTTATGGTGTGCACTCTAAAAGATCATTTGCGGATACACACAGGTGAGAAGCCGTTCTTATGTTCCATCTGCGGCAAGGGTTTCAGTCAGAAGAACAACCTGGCACAACATGTTCGGCGGCACATGGGTGTGAAGCCCTACAAATGTGACACTTGTGGGATGGAATTTGTATCAAAGGGCGAGTTAGACTCGCACACTAGAAAGCATACCGGCGCCCATCCCTTCATATGCGACGAATGCGGCAGCGGATTCACCACATCATCAGCCCTCGTCAAGCATCGCAGGACCCACACCGGTGAGCGACCCTACTCCTGTGACTTGTGCCCTATGAAATTTGCTGCTACGGGCACTTTGAAAAACCACCGTCGCACGCACACGGGCGAAAGGCCGTACCAGTGCAGTCATTGTGAAAAGTCTTTTGTTCAGCGTTCAGATTTGATCTCTCATATTAGATGTCATACAGGCGAAAGGCCGTTCGTGTGTCCGCAGTGCGGGCAGGCGTTTAGGAAGGCGGCTGCTATGAAGACTCATGTAAAAATGCATTCTAGAGATAATGTTAGTTTAGTTTTGAATATGCAGTGTGATAGACAAATGTAA
Protein Sequence: MEVDQNFDKICRACLSESSNMKSLFAKLEGGQQLLDLFIIAANIEVNSEDALPKQVCGDCESYLYQADEFKRRCKESEMILKNFCSNASHPYLVKTDQETDEDDIKMHNSCLEKSNSYEDETEKPDFLSLFANSDVSFKKLDTSKIKETCEGVVEAVKTEISMEYDNIDYTDNFDDREESVPLETENLKEVTTYKCVCGEEYKSKEKLKEHVKLKSCVKKVRIKDKKFKTCIKIKNKIECPKCNITFDTINKWNTHQLTHVNEVTKIAKPAQEEEEELPKPQCSLCLRKFKNKKTLTKHIKRHEAKDNVKYICSKCKREFKYKAFLESHMLSVHANGTDGYTCEDCPEKFSTRKSLEVHKDSHRKKKNSCPFCNKSFLMVCTLKDHLRIHTGEKPFLCSICGKGFSQKNNLAQHVRRHMGVKPYKCDTCGMEFVSKGELDSHTRKHTGAHPFICDECGSGFTTSSALVKHRRTHTGERPYSCDLCPMKFAATGTLKNHRRTHTGERPYQCSHCEKSFVQRSDLISHIRCHTGERPFVCPQCGQAFRKAAAMKTHVKMHSRDNVSLVLNMQCDRQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00207184;
90% Identity: iTF_00207184;
80% Identity: -