Bbet023242.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989890.1:4418980-4425853[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.052 4.2 8.6 0.1 2 23 50 72 49 72 0.95 2 19 0.00074 0.059 14.5 0.2 2 23 179 201 178 201 0.93 3 19 0.00028 0.023 15.7 0.2 2 23 223 244 222 244 0.96 4 19 0.00029 0.023 15.7 0.1 1 23 248 270 248 270 0.94 5 19 0.00024 0.019 16.0 0.7 1 23 277 300 277 300 0.96 6 19 0.36 29 6.0 6.3 1 23 305 328 305 328 0.91 7 19 1.5e-05 0.0012 19.7 0.2 1 23 334 357 334 357 0.97 8 19 5.7e-06 0.00046 21.1 0.1 1 23 363 385 363 385 0.97 9 19 9e-07 7.2e-05 23.6 1.2 1 23 391 413 391 413 0.99 10 19 9.9e-05 0.0079 17.2 5.3 1 23 419 441 419 442 0.96 11 19 0.049 3.9 8.7 0.1 2 23 560 582 559 582 0.92 12 19 0.00098 0.079 14.1 0.1 1 23 603 625 603 625 0.97 13 19 0.0026 0.21 12.7 0.0 1 23 629 651 629 651 0.94 14 19 0.0032 0.25 12.5 1.3 1 23 658 681 658 681 0.97 15 19 0.11 9.1 7.6 2.2 1 23 686 709 686 709 0.93 16 19 0.0002 0.016 16.3 0.1 1 23 715 738 715 738 0.97 17 19 0.00035 0.028 15.5 0.3 1 23 744 766 744 766 0.96 18 19 0.00021 0.017 16.2 1.8 1 23 772 794 772 794 0.98 19 19 0.00018 0.014 16.4 5.3 1 23 800 822 800 823 0.95
Sequence Information
- Coding Sequence
- ATGTTTGGCTGTTTGTACTGTCCTTACATGTCACCTGATTTCGGTCCAGTGAAGGACCATATCGGCGAACACAAGGGCACAGACCGAGCTCAGGCTCTCCGCAACGTGGAGAGCTCGTCAGCGTGTAAAGTAGATGTAACAGATTTGAGATGTGAAATCTGTCAGGAGAGCATGAAAGATATATCGACGCTGTTCGAACATTTAATAAAAGCGCACGACAAGCCATTAAAAAAAGAATTCAATTTTGGTGTTGTGCCTTATTTGTTGAACGAAGGATTCATCTCCATAAAATGGACCACTCAAGATTCACACAAAGACTTTGGAGACGCTCGAGACAACGCAGCCATGATACTGGAATATTCTAATATTACCCCATTTAAATTTCACGGCAATACGTTCGGGTGCGCTTACTGTCCTTTCACGTCACCAGATTTCGGTCCTATCAAGGTCCACAGTATAGAGCACAAGGACAGAGCGAAAGCCCTGCGCGCTATAAAACCAAGTTCAATGTGTAAAGTAGATGTTACAGATCTGAAATGTGAAATATGTCAAAAAAGCACTACTAATATATCATCACTGTTTGAACACCTCATAGAAGTCCACAACAAACCTTTGAACAGAAATTTCAAATTTGGCGTCTTGCCTTATTTACTGAATGATGGCATATCGTGCGCTGATTGTGGTCTTAAATTTGATACGTTTCGAAACTTGAACTCGCACGTTAACATCCATTACCCACATTATATTTGCTCGGAATGCGGGCAAGCTTTTACAAACGAGGAAAGATTAAAAGCTCACGGGTTTGTACATCAGAAAATTTCAAAAACGTTTAACTGTACAAAATGTGACGAATCGTTCTCCACTATTGGAAGTAAACGAAAACACATGGCGTCCGCGCATAACATATTCGCCCATAAGTGCCCTTATTGCAAGGAGTCGTTCAAAGAACATCACCTTAGAGTAGGTCATTTGAATAAATATCACAATAAGAATATTACCTACCCTTGCACGGTGTGCCCTAAAGTATTTACCACTGCGTCGAATCGATCACTGCACGTGCGGAGCGTTCACATCAAAGAGAAAAGTTTCGTGTGTCCAATATGTGGAGACATGTTCACTAACGCTTACGAATTGAAAAATCATATGGTAAAGCACGGCGGAGAGAAGAAATATCAGTGTCAAGTGTGCAAGAAAGCGTACGCCAGAAAGAAGACTTTAACAGAACACATGCGTATACATAACGATGACAGGAGATTTGTTTGTGTGCATTGTGGGAAGGCTTTTGTGCAGAAATGCAGCTTGAAGGGGCACGTGAAGACACATCATCCTATAGCTGAGTTTGGAGAGCAGGCGGGCGCCGATCCAAGCGTAGTCCCAAACATGCAAACCAAACCTGATAATCGCAATAAAAGGCAATTTATTAGGGATAGACGCATCGCCATAAAGTGGACCACAAAAGATTTTGGAGACGCACGTGACAATGCTGCCATAATTTTGAAGTTTTCTAACGCGTGCCCATTTAAAATTCACCGAAATACATTCGGCTGCGCGTGTTGCCCTTACACGTCACCAGATTTCGACCCTATCAAGCGCCATACCAACGACCATAAGAACAGAGCTCAGGCTGTCCATACCGTAGATAGCTCCTCGGTATGCAAAGTAGACGTAACAGATCTGAGATGCGAGATCTGTCAGAAAGACATAAAAGATATATCAACGCTCTTTGAACACTTAATCGAAGCGCACAACAAACCTTTAAATAATAATTTCAGATCTGGGGTCGTGCCGTACCTGTTGAATGACGGATTCGCGTGCGCAGATTGTGGGGTAGAATTCGATGCGTTTCGAAACTTAAATTCTCACATGAACATCCACTACCCACATTTCGTTTGCTCTAATTGCGGCCAAGGTTTTATCACTGAGGGGCGATTAAGAGCTCATGCGGGCGTACACAGAAAAACATCAAAAATACACAAATGTGCGAGATGTGATGAAACGTTTCCAACTTTTGCAAGTAGACGCGCACATATGGCAACTAAACATAACATATTTGCACACAAATGCCCTTACTGCAGCGAATCATTTCTGGATAATCGCCTTAGAGTGAGACATTTAAATCAGTATCACGATAAAAATATCAACTACCCATGTTCGATGTGTCCGAAAGTCTTTACGATCGCTTCAAACCGCTCCGAGCATTTACGGAGTGTTCATAGAAAAGAAAAACGATTTGCTTGCGCCGTGTGCGGAGACATGTTCACTCACGCTTACGCCTTGAAAAACCACATGGTCAAACATGGCGGAGAGAAGAAACATGAATGCCAGGTGTGCATGAAAGCATATGCGAGGAAGAAAACTTTGAAAGAACACATGCGTATACATAACGATGATAAGAGATTTATCTGTGTGCATTGTGGCAAGGCGTTTGTGCAGAAATGCAGCCTCAAAGGGCATGTGAAGACGCATCATCCCGATGCAGCGAATGATGATCAAACGGCTAGCGAACTCGCAAGCGGTGCTCACTGA
- Protein Sequence
- MFGCLYCPYMSPDFGPVKDHIGEHKGTDRAQALRNVESSSACKVDVTDLRCEICQESMKDISTLFEHLIKAHDKPLKKEFNFGVVPYLLNEGFISIKWTTQDSHKDFGDARDNAAMILEYSNITPFKFHGNTFGCAYCPFTSPDFGPIKVHSIEHKDRAKALRAIKPSSMCKVDVTDLKCEICQKSTTNISSLFEHLIEVHNKPLNRNFKFGVLPYLLNDGISCADCGLKFDTFRNLNSHVNIHYPHYICSECGQAFTNEERLKAHGFVHQKISKTFNCTKCDESFSTIGSKRKHMASAHNIFAHKCPYCKESFKEHHLRVGHLNKYHNKNITYPCTVCPKVFTTASNRSLHVRSVHIKEKSFVCPICGDMFTNAYELKNHMVKHGGEKKYQCQVCKKAYARKKTLTEHMRIHNDDRRFVCVHCGKAFVQKCSLKGHVKTHHPIAEFGEQAGADPSVVPNMQTKPDNRNKRQFIRDRRIAIKWTTKDFGDARDNAAIILKFSNACPFKIHRNTFGCACCPYTSPDFDPIKRHTNDHKNRAQAVHTVDSSSVCKVDVTDLRCEICQKDIKDISTLFEHLIEAHNKPLNNNFRSGVVPYLLNDGFACADCGVEFDAFRNLNSHMNIHYPHFVCSNCGQGFITEGRLRAHAGVHRKTSKIHKCARCDETFPTFASRRAHMATKHNIFAHKCPYCSESFLDNRLRVRHLNQYHDKNINYPCSMCPKVFTIASNRSEHLRSVHRKEKRFACAVCGDMFTHAYALKNHMVKHGGEKKHECQVCMKAYARKKTLKEHMRIHNDDKRFICVHCGKAFVQKCSLKGHVKTHHPDAANDDQTASELASGAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -