Bbet024225.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989875.1:12738338-12742942[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00035 0.028 15.5 0.8 1 23 14 36 14 36 0.98 2 24 0.18 14 6.9 0.2 1 23 230 252 230 252 0.94 3 24 1.5 1.2e+02 4.1 0.5 1 22 272 293 272 293 0.95 4 24 0.0036 0.28 12.3 0.3 1 23 313 335 313 335 0.95 5 24 0.034 2.7 9.2 0.3 5 23 343 362 340 362 0.95 6 24 0.0037 0.29 12.3 0.5 3 23 451 472 450 472 0.96 7 24 3.2 2.5e+02 3.0 0.3 1 8 481 488 481 491 0.92 8 24 2.5e-05 0.002 19.1 2.1 1 23 506 528 506 528 0.96 9 24 5.5e-07 4.4e-05 24.3 2.3 1 23 534 556 534 556 0.99 10 24 1.1e-06 8.5e-05 23.4 2.7 1 23 562 584 562 584 0.98 11 24 1.2e-06 9.2e-05 23.3 3.8 1 23 590 612 590 612 0.99 12 24 3e-05 0.0024 18.8 0.7 2 23 618 640 617 640 0.95 13 24 8.4e-05 0.0067 17.4 0.7 1 23 650 673 650 673 0.98 14 24 2.2e-06 0.00017 22.4 0.5 2 23 681 703 680 703 0.97 15 24 0.00084 0.067 14.3 2.7 2 23 710 732 709 732 0.96 16 24 0.021 1.7 9.8 0.1 1 23 737 760 737 760 0.94 17 24 0.021 1.7 9.9 9.4 1 23 769 792 769 792 0.93 18 24 0.0005 0.04 15.0 1.2 2 20 796 814 795 815 0.95 19 24 8.8e-05 0.007 17.4 1.3 2 23 820 842 819 842 0.94 20 24 0.00028 0.022 15.8 0.6 1 21 851 871 851 876 0.94 21 24 0.0084 0.67 11.1 0.5 1 20 883 902 883 902 0.95 22 24 0.031 2.4 9.4 1.5 2 21 911 930 910 931 0.94 23 24 5.6 4.5e+02 2.2 0.1 2 12 940 950 939 951 0.86 24 24 0.0013 0.1 13.7 0.2 2 23 964 986 963 986 0.96
Sequence Information
- Coding Sequence
- ATGCAAAGTTGCTGTATAGAATTAAATCACATAAAAATATTTAAATGTGATTTGTGCACAAGTTTCTTCCCAGACTTGTCAAGTCTAAAAGCACATCAAGAGAAGCATGTTGACGATGAAAGAACAATGAGTGATGAAGAAGATAGCACATCAAGTTTACAATCAGGTTTTCACAACAAGGAAACATACATTAAACATAAGAATGAACAGACTAATATTAATCAAAATGATACTAATATAATTGATGAAAATGCAATAAATAAAATTGTCAGTAGAGAAACAAATGTAATTGATGGTTATTTAACAAACAAGATTGTTGAAAATGAATTAAATGAGAGTGACAAAAGTGAATTAAACAAGTTTGATGAAAATACAATGAACAAAATGAATAGAAATGTAATGAATGAAATAAATGAAAATGCAGTTACTGACATAAATGAAAATAAAAAAAATATGACAAATGAATACAATATAAACAAGATAGAAGAAATTGCAACAAATGAGATGGATGTAGACAAACCAAACATGATGGACATAGATACAACAAACGAGATGTATAGAAATGAAACAGATGTGATGGTTGATAATGAAACCGACAAGAAACATGACAATGAAACTATAAAAATGGAGGAAAACGAAATGAAAATTACTGAAAACGCAACAAAAACGTTACACATAAATGAAAAATATTTCTGTTCCCCATGTGTCAAATTCTTTGATAACCAGCCAGACCTTGATGAACATCAGCAATGGCACAGTCAACAAGCTAAAATGATGTCAAGTTGCAGTGTAAAATTAATTCGTGACAAAATGTTTAAATGTGATTTTTGCCCGAGTTATTTTCTGAGTTTAGAAAAGCTGATTATACATCAGAGAAAATATTTCAACAAAGATCGGTCAAAGCGTCAAAACGACAATGATGAAATGAAAAAGCCTTATCAGTGTATAACGTGCAAATGGAGGTTCGTGATGAAAAGCACTCTCGAAGCTCACATGGTACTCCACGAACCTTTCCCACATATATGTGAATGTGGAATCGGATACTACCAGAAATACGATTTGGAATCCCACAGAAAAGTTGTCCATCCAAACTATAGGACACCAGTCGAAATCAAGATAGAAAAAGAAGATTATAATCTCACTTCCCAACTGAGACCCAACAATAAAATAGGGCCCAGACTCAAAGCATGTCTAACATTTAAGCAACCAAAGGATAAAACAAACAAACACAAACGTTTAAAAACGAAACAAAATACAAAGAAACGTGTCAAGAACGAGAACCCTATCAAAGTGAAACGTGAACATGAAATCAAAATGGAATTTGAAAAGGACGAAAATGGCCTCATACTTTGTACAGTCTGTTCGCAAACTTTTGATTCAGATAGCGATTTGCAAACACATTTGTACCGGGATCATACTAAAAAGATTTCCAGCAGCAATTACAAGTGCAATGTTTGCAACAAAATAATAGAGGTAACGAAAATTAAAAAACACGTACTGTGCCATATAAAACCTTACCTCTGTCATATCTGTAATAAAAGATACTCACAATCTGGGGCGCTAAAATTGCATCAGCTAAGACACAGTGGCGCTAGACAATTTCAATGTAATGAATGCGACAAATCTTTCTATGACTGTGCGACTCTTCAGCTGCATATGAGAGTTCACTCGGGGGAGAAACCCTTCGAGTGCAAGCGTTGTGGGAAGTGCTTCAGCGACCCCTCGGCTTTCAAACGTCATACACTCATACACACGGGCTTAAAGCCATATAAGTGCGAGACGTGTCCGAAATCATTCTGCGATCCCTCTGCGTTATACAGACACATCCGCCATCATCAGGGCTATAAAGTGTCATGTCCTAACTGCCCCAAAACGTTTGCATCTAATGCCTCTTTGCTACATCACCTTAAACAGAATCACAGCACAAAAAAAGAAGACAAAATCAAATTTGAATGTGATATCTGCAATTCTAAGTTTACACTCAAAGGTAATCTATCGGACCATATGAAAAAGGTACACTTGAACAAGAGAATCGAAATGGAATGTGAGATCTGTTATAAAATCTTTACGCAAAAAAATAATCTAATGAAGCACATCCAAACTGTACACATGGATATACCTGTGGTCGAATGTGATATTTGTCATAAAAAGTTAAAAAATGCGTATTGTCTTAAGGCTCATAAGAGAATAGTACATCTTAAAAAGAGATATCCATGTGACATATGCGGTGCGCTTTATATAGAGAAATCTAAATTGAAAATGCATGAACAATTAAAGCACGGACCCCAACCGTTGCCCAAGAACTACGAGTGCGATCATTGCCATAAATCATTCCATTTCAGAAGTCACATCAGAAGCCACATTATACAGAAACATTTAGGTAACAAATGTAAAACTTGTTCAAAGACGTTTTCTACGTCAGTGCTATTGAAACAACACAAAATAGATGGATGCACGCGATGTGGTATTTGTAACAAGGCTTTCAGAACTCCTAAAGCATTGAAAGAACATCACACCGTCACTCACTTAGATAAAAGCGAACAACAAATGTACAGTTGCGATTACTGTAATAAACAATTTCCTCTTAAAAGTAGGTTGAGGGCGCACATCCAGAATGCTTCTAATCATGCGCGGCCTGTAGATTCGTTTCGCTGTGACCATTGCAGTGCAACATTTTCCTACAAGAGTGCGATCGTGACTCATATATGGGAAAAGCACATGGTCGCTCTTTACTGCAACATTTGCATGAAGATGTTTTTTAGAGAATATGATTTCCGGAAACATAAGCGAAATGCCAGCTGCCGCTCCCGGCAAGTTCAGTGTAAAATATGCCACCAGACGGTCACAAATATGCCCAGGCATCTATTGTTTCACGGGTCCAAAAGGTTACAATGCGATGTGTGCGGACTTAAATTTATACTTAAACAAACGTTAATCCAGCATATTATAAAGAATCACGCGCCTAAAGCAGTGAAAAGGATCGCATTGTGA
- Protein Sequence
- MQSCCIELNHIKIFKCDLCTSFFPDLSSLKAHQEKHVDDERTMSDEEDSTSSLQSGFHNKETYIKHKNEQTNINQNDTNIIDENAINKIVSRETNVIDGYLTNKIVENELNESDKSELNKFDENTMNKMNRNVMNEINENAVTDINENKKNMTNEYNINKIEEIATNEMDVDKPNMMDIDTTNEMYRNETDVMVDNETDKKHDNETIKMEENEMKITENATKTLHINEKYFCSPCVKFFDNQPDLDEHQQWHSQQAKMMSSCSVKLIRDKMFKCDFCPSYFLSLEKLIIHQRKYFNKDRSKRQNDNDEMKKPYQCITCKWRFVMKSTLEAHMVLHEPFPHICECGIGYYQKYDLESHRKVVHPNYRTPVEIKIEKEDYNLTSQLRPNNKIGPRLKACLTFKQPKDKTNKHKRLKTKQNTKKRVKNENPIKVKREHEIKMEFEKDENGLILCTVCSQTFDSDSDLQTHLYRDHTKKISSSNYKCNVCNKIIEVTKIKKHVLCHIKPYLCHICNKRYSQSGALKLHQLRHSGARQFQCNECDKSFYDCATLQLHMRVHSGEKPFECKRCGKCFSDPSAFKRHTLIHTGLKPYKCETCPKSFCDPSALYRHIRHHQGYKVSCPNCPKTFASNASLLHHLKQNHSTKKEDKIKFECDICNSKFTLKGNLSDHMKKVHLNKRIEMECEICYKIFTQKNNLMKHIQTVHMDIPVVECDICHKKLKNAYCLKAHKRIVHLKKRYPCDICGALYIEKSKLKMHEQLKHGPQPLPKNYECDHCHKSFHFRSHIRSHIIQKHLGNKCKTCSKTFSTSVLLKQHKIDGCTRCGICNKAFRTPKALKEHHTVTHLDKSEQQMYSCDYCNKQFPLKSRLRAHIQNASNHARPVDSFRCDHCSATFSYKSAIVTHIWEKHMVALYCNICMKMFFREYDFRKHKRNASCRSRQVQCKICHQTVTNMPRHLLFHGSKRLQCDVCGLKFILKQTLIQHIIKNHAPKAVKRIAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -