Bany006228.1
Basic Information
- Insect
- Bicyclus anynana
- Gene Symbol
- Bcl11a
- Assembly
- GCA_947172395.1
- Location
- OX359230.1:2830921-2848522[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.005 0.27 11.9 1.0 1 19 45 63 45 68 0.93 2 17 2.1 1.2e+02 3.7 1.8 2 23 105 127 105 127 0.93 3 17 1.1 62 4.5 5.6 1 23 132 154 132 154 0.97 4 17 0.00016 0.0089 16.6 1.1 1 23 160 182 160 182 0.96 5 17 0.27 15 6.5 1.9 1 23 188 211 188 211 0.83 6 17 0.016 0.87 10.3 5.6 1 20 235 254 235 258 0.90 7 17 5.3e-05 0.0029 18.2 0.5 2 23 295 317 295 317 0.94 8 17 0.15 8 7.3 3.7 1 23 323 345 323 345 0.97 9 17 0.00027 0.015 15.9 0.9 1 23 351 373 351 373 0.98 10 17 0.00013 0.0068 17.0 6.5 1 22 402 423 402 425 0.90 11 17 0.15 8.3 7.3 0.7 2 21 462 481 462 482 0.89 12 17 0.0027 0.15 12.8 5.5 1 23 489 511 489 511 0.98 13 17 0.00023 0.013 16.1 1.4 2 23 541 563 540 563 0.89 14 17 0.012 0.66 10.7 0.2 2 21 600 619 600 620 0.91 15 17 0.0047 0.26 12.0 5.0 1 23 627 649 627 649 0.98 16 17 0.00015 0.0083 16.7 0.5 1 23 655 677 655 677 0.97 17 17 0.0016 0.089 13.5 7.7 1 23 683 706 683 706 0.94
Sequence Information
- Coding Sequence
- ATGGCAGAAAATTTTGTTCGTGAATTTGGTTGCGATACTAGTCCTTATGTATTTAGTCTGAGCCCGCAGCATACACTATGCGATAATGACAAACCCTACACGGTAACGCAAAACGAGGATGGCACGCGGAGATTCAAGTGCGAGAAATGTGAGAGGACATTCAACACCAGTACGGAAGCTCGCAATCACGACATGTATGTTCACTTGAAGATGTCACGCCCCCAGTATTGCCGCTGTCACATCTGTCACGTCAAAGTGAACAAACGAGAAAGAGCTTCTCACATGGAGACAGTACATGGACAAGCACCGCCAACTTGTCGTGCTTGCGGCAAAAAGTTGCTATCACAGGCTTCACTACTCCGCCACGAACGACTGTGTCACATTCGACAAAAGCACAAATGTGACAAATGCGATCACACTAGCCTAAACGAAAACCAATTGAAAACGCACAAGAAGATCCACGAACAAGAGAAGCCGTTTGCTTGCGCTGTGTGCAAAAAGGCGTTTAAGTTTATGAAGACTCTGACAAAGCACATGTTGCTGCATTCGAACGCACGGCCTCATGTGTGTCCTGTATGTAAGCGCGCGTTTGTTGAGAAGGCAACTTTGGGGTGTCATTTGACTAAAAAACATCCTGAAGTTAAAGCGAGCGTGACAGGCGAGATCTTCACGCTGAAGCAAAACGAGGACGGCACGCGAAAGTACAAGTGCAAGAAATGCGAGAAGTGCTTCAAAAGCACAACAGAAGTCCGCACGCACAACACTTTCGTCCACTTGAAGATGTCACGCCCAAATCATGCCCGTTGTCGCATATGCAACGTGGAAGTGAGCATCCGCGACAGAGTGTCTCACATGGAGAAAGAACACGGCAAACCACCGCCCACTTGCGGTGCTTGCGGCAAAAAGTTCACAACTCCAGCACTACTTTTGCGTCACCAAAAACAGTTTCATTTGAGGGAGAGGGATCACAAATGCGATAAATGCGACTATGCTAGCTTGACAGCTTACCATTTGAATTTACACAAAAAGATTCACGAGGAAGAGAGAGAGTTTGTTTGCGATTTGTGCAATAGTTCGTTCAAGTGGAAGAGTACTTTGACAAAGCATATGTTGATACATTTGAACATACGCCCCCACAAGTGTCCTGTATGCGAGGATAACGAGACATCCACGATAAAGCAAGAATACAAGGAGACGCGACCATATAAGTGCAAGAAATGTAAGAAGCGCTTCAAAACCAATTCAGAACTGCACAAGCACAACACTTACGTCCACTTGAAGAAGCCCCGTTCACAGCATGGTCGCTGTCATATATGCAATATGCAAGTGATCAAACGTGAAAGAGCGTCTCACATGGAGACAGAACACGGACGACCAGCGCCGACCTGCGGCGTATGCGGCAAAAAGTTCAACTGTCCGTCAGATGTTTTAAGCCATGAACGACGCTGTTTCAAAACACAGAACTTCAAATGCGATAAATGCAATCACGCATGCACAAACGCAAATCAATTAAAATTGCATAAAAAGATCCACGAGGAAGAAAAACCGTTTTCCTGCGATGTATGCGAAGTTAACGAGATCTCCACGCTAATGCGGAAAGCGGAGGACACGCAAACACTCGAGTGTAAGAAATGTAAGGAGTTCTTCAAAACCAATTCAGAACTTCGTCAACACAACATTTATGTCCACTTGAAGAAGTCACGCCCCCAGCATAGCTGCTGTCATATATGCAATATGAAAGTGAACGCACGTGACAGAGCGTCTCACATGGAGGCAGAACACGGACGACCAGCGCCAACTTGCGGCGCTTGTGGCAAAAAGTTCAACTTTCCGTCAGAAGTTATGCGTCATGAAAAACGTTGTCAATCCAGACAAAACTTTAAATGCGATAAATGCAATCACGCATGCATAAACGCAAAACAGTTAAAATTGCATAAAAAGATCCACGATGAAGAAAGACAGTTTGTCTGCGATGTATGTAAGAAATCGTTTAAGGGAAAGGATATATTATCGAGGCATATGTTGTTGCATTCGAATATACGCCCTTATGTGTGTCCTGATTGTGGGCAGGCGTTTACTCACAAGTCACATTTGCACTGTCACCTGACTAGAAAACATCCTGGAGTGAAGTCGGGCGTGAAAGGTAAATAA
- Protein Sequence
- MAENFVREFGCDTSPYVFSLSPQHTLCDNDKPYTVTQNEDGTRRFKCEKCERTFNTSTEARNHDMYVHLKMSRPQYCRCHICHVKVNKRERASHMETVHGQAPPTCRACGKKLLSQASLLRHERLCHIRQKHKCDKCDHTSLNENQLKTHKKIHEQEKPFACAVCKKAFKFMKTLTKHMLLHSNARPHVCPVCKRAFVEKATLGCHLTKKHPEVKASVTGEIFTLKQNEDGTRKYKCKKCEKCFKSTTEVRTHNTFVHLKMSRPNHARCRICNVEVSIRDRVSHMEKEHGKPPPTCGACGKKFTTPALLLRHQKQFHLRERDHKCDKCDYASLTAYHLNLHKKIHEEEREFVCDLCNSSFKWKSTLTKHMLIHLNIRPHKCPVCEDNETSTIKQEYKETRPYKCKKCKKRFKTNSELHKHNTYVHLKKPRSQHGRCHICNMQVIKRERASHMETEHGRPAPTCGVCGKKFNCPSDVLSHERRCFKTQNFKCDKCNHACTNANQLKLHKKIHEEEKPFSCDVCEVNEISTLMRKAEDTQTLECKKCKEFFKTNSELRQHNIYVHLKKSRPQHSCCHICNMKVNARDRASHMEAEHGRPAPTCGACGKKFNFPSEVMRHEKRCQSRQNFKCDKCNHACINAKQLKLHKKIHDEERQFVCDVCKKSFKGKDILSRHMLLHSNIRPYVCPDCGQAFTHKSHLHCHLTRKHPGVKSGVKGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -