Bany012071.1
Basic Information
- Insect
- Bicyclus anynana
- Gene Symbol
- -
- Assembly
- GCA_947172395.1
- Location
- OX359205.1:2592178-2595750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.069 13.8 2.0 2 23 163 184 163 184 0.95 2 11 0.0032 0.18 12.5 2.6 2 23 191 213 190 213 0.94 3 11 0.00024 0.013 16.1 0.7 2 23 222 243 221 243 0.97 4 11 1.3 71 4.3 1.8 1 12 249 260 249 261 0.89 5 11 8.9e-05 0.0048 17.4 0.6 2 23 280 301 279 301 0.97 6 11 0.00037 0.02 15.5 0.4 1 23 307 329 307 329 0.97 7 11 0.0044 0.24 12.1 6.1 1 23 337 360 337 360 0.96 8 11 6.8e-06 0.00037 21.0 1.6 1 23 365 387 365 387 0.98 9 11 4e-06 0.00022 21.7 0.9 1 23 394 416 394 416 0.98 10 11 0.00042 0.023 15.3 2.1 1 23 422 444 422 444 0.98 11 11 5.7e-06 0.00031 21.2 5.0 1 23 450 472 450 472 0.98
Sequence Information
- Coding Sequence
- ATGCCAGGTTCTAGTAAACTATGTCGTGCTTGTCTAACAGCAACAGACAGTTTTCAATATAGTTTATTTGAAAATGTTTCGCCGGATGTTTATTGGTTTTGCACTAATATTGAGATAGCTAAAGAAGATGTTCTGCCAAAAGCAATATGTAACACATGTTATGATCTTATAACAAAGTTTTCAGAGTTCAAGAGGACTTGTCTACAATCCCAGAACACTTTACTTGTATATTATTCAGTTGCGCCAGAAAGTAAAAAGCTTGACTGGCTTAACAATGACCCTAAAGTGGTAGAGACGCAAAACAATGATTTGAACGCACTTGTTGAAAACTATGAAGATGTTACAGTCAAAGTTGAACACTTTGGGACAAATAATGACGATGATTTTGACAATACTGAGCTTCCTAATTCATCAGAAGTTACAGCAAAGGAAAATAAAACACATAAAAAAGTTAGAGTTAAAACAAGTAAGAGAAGGAAGCTGAGAAAATGCGAATTGTGTAGAAAAAGTTTTGATTCTCGTGAAAAATTTGAGCGTCACAAGTTGGCACATCAAAAAACGAAATCTCTAAAATGCACGCCATGCAAAAAAACCTTTATGACGTTGAGCGGTTTGAAGAAGCACCACCTCAGCTGGCACGAGCGCGTCAGGCTCAGCAGCGTCACGTGTCGCACGTGCGGCAAGATAGTGAAGAGCCGCGAGACGCTGCGCGTTCACCAGAAGCTGCACGGCGAACGGAGCCTGTTCATATGCAACGTGTGCGGGAAGGGCTGCACCACTGGCGTCATTCTAAAGGTGAATATGAAACTGCTTCACCGCGTCAGACTCAGTCGCGTCACGTGTAGCACGTGCGGCAAGATAGTGAAGAGCCGCGAGACGCTGCGCGTTCACCAGAAGCTGCACGGCGAACGGAGTCTGTTCATATGCAACGTGTGCGGGAAGGGCTGCACCACTAGCGTCATTCTGAAGGCGCATCTAGAAACGCACAAAGAAAACAGAGAACGTCAATTCACATGCGAGCACTGCGGCAAAAAGTTCTACACAAACAAGATACTGATGTCACATGTGCAAAAGTGTCACACGGACAAGAGATACATTTGCCAAGTGTGCAGCTACCCGTTCACGGACAAACACAACTTAGCCAAGCATCTGTTGAAGCACGAGGGCAAAGGGAGATTGTATAAATGTGATATTTGTAACAAGACGTTCACTGCCAGGTCATCGTACGTGGAACATCAGAGAGCTCATTCTGGGGAACGTCCCTTCACGTGTACGTATTGTTCGAAGAGCTTCATTGCTAAGAGACGATTGATAGAACACAATCGCACACACACCGGGGAAAAGCCGCATAAGTGTTCAGTGTGTGAGCACAGTTTCACTCAACGGGGTACATTGACTCGACATATGAAGGTTCATGATAGAGGTGTTCCTGTGATAAAGTAG
- Protein Sequence
- MPGSSKLCRACLTATDSFQYSLFENVSPDVYWFCTNIEIAKEDVLPKAICNTCYDLITKFSEFKRTCLQSQNTLLVYYSVAPESKKLDWLNNDPKVVETQNNDLNALVENYEDVTVKVEHFGTNNDDDFDNTELPNSSEVTAKENKTHKKVRVKTSKRRKLRKCELCRKSFDSREKFERHKLAHQKTKSLKCTPCKKTFMTLSGLKKHHLSWHERVRLSSVTCRTCGKIVKSRETLRVHQKLHGERSLFICNVCGKGCTTGVILKVNMKLLHRVRLSRVTCSTCGKIVKSRETLRVHQKLHGERSLFICNVCGKGCTTSVILKAHLETHKENRERQFTCEHCGKKFYTNKILMSHVQKCHTDKRYICQVCSYPFTDKHNLAKHLLKHEGKGRLYKCDICNKTFTARSSYVEHQRAHSGERPFTCTYCSKSFIAKRRLIEHNRTHTGEKPHKCSVCEHSFTQRGTLTRHMKVHDRGVPVIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -