Btha016956.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000038.1:2419504-2431331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.3 2.8e+02 2.5 0.9 1 20 633 652 633 654 0.90 2 10 0.0023 0.15 12.8 4.8 2 23 689 710 688 710 0.97 3 10 0.38 24 5.8 0.7 1 23 733 754 733 754 0.91 4 10 0.018 1.2 9.9 1.0 2 23 802 823 801 823 0.95 5 10 0.015 0.96 10.2 0.4 2 23 840 861 839 861 0.96 6 10 6.1e-06 0.00039 20.9 5.5 1 23 867 889 867 889 0.99 7 10 0.00015 0.0097 16.5 1.1 1 23 894 916 894 916 0.98 8 10 0.00048 0.031 14.9 4.3 2 23 922 944 921 944 0.96 9 10 3.7 2.4e+02 2.7 0.2 1 10 951 960 951 970 0.84 10 10 7.4e-05 0.0048 17.5 0.5 3 23 983 1004 982 1004 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAAACTATGAAGATAAATCGCGGATACGAAAAGATTTGGAGGTGgaagatgaaaatattttagcttTGCAGGCTAACATAACAAAACTTACTGCTACTATAAAGGAAGAAATAGGTGACAAGTTTTTTGATGATAATACCAATAATGACAATGAAGAGGTTTCACCAAAACCATCAACAATACAATTCTCAGTTAAGGTGAAGGTAGAAAAATGTGGCGATACTGAGAATATAGATGTTCTTGATGATGAGAGCATTAACAGTGCAAGTGGTACACACTTGGAGAAACATAGTGTTAatgataaagaaattattagtgAAGATGcagTGATAGATCATCAATTCATGAATGGATTGTCAAAAATTCCTGATAGACCTTCAATAATTGACAATAGAAAACTATCTACCACAAGCAATAATGAGCAGGgcattattattagaaatgatAGTCCACTTTTCACTGGAAGTCAAGAACAAGTTCAATGTGATGATTATGAACAACAAGCAATATTAGATGCTGAGATAAAAAAAGGTGTAGAAATGGAAAAAGCTTTATCGAAAGTTTTTAGTGTGTCTAATGCCTATCAAAAGTTATTGGAAAAGGAAACGGAGGAACCAATGGAGGAGGATTTCTACGAAGATGATCTTATTATTCTCGACCGTCGTGATGAAGTTACAGTAATTTCGGATTCTGATTCTGAAGAGCCCAGTGTAAAAAAGGAAATAGAAGAATTTGTGGAAGAGATTGTTAAAGACaaaatagcatttaaaaataagaaagaactTAATTATATGACTAATAAAACTGTAATCGCCAAGAAAGAACCTGACTGTGATAATAAAGCTAAGGAAAAATTTGATTTGAATGATGTAATTGAGAAAGTTGGAGatacaacaaaatttaataaagaggAAGAACTTAATTTGAATAGTgaaactataatcaaggatgaATCGGATTGGAATAATATATCTGAAGTCAATGAAGACTATGATTTGAATGATGTAACTTTAAAAGTTGGAGATGTAACTAAAACTGAAAAAGAAGAACTTAATTTGTATAAGACAACAGTAATTAAGGACGAACCTGATTGGAATGACATAACTGAAGTTAATGAAGAATCTACTATAATCAATGAAGAATCAGAAATGTTATTATGCCAAGAAAAAGATGAACCCTTGAATCAATCTGCAAAACAAAAATGCACAAAgctgttaaaatataatgttgacGACAATGAAGGCATTGTATCAGATGGTTCAAAACATGAATCAGAATTAGACCAAGATTGCAATGGAATAGACAAAAATTGTTCGGAACAAAATACGAAATTTTACAACTGCCAAAAATGCTCTAAAACTGTAATCGCCAAGAAAGAACCTGACTGTGATAATAAAGCTAAGGAAAAATTTGATTTGAATGATGTAATTGAGAAAGTTGGAGatacaacaaaatttaataaagaggAAGAACTTAATTTGAATAGTgaaactataatcaaggatgaATCGGATTGGAATAATATATCTGAAGTCAATGAAGACTATGATTTGAATGATGTAACTTTAAAAGTTGGAGATGTAACTAAAACTGAAAAAGAAGAACTTGATTTGTATAAGACAACAGTAATTAAGGACGAACCTGATTGGAATGACATAACTGAAGTTAATGAAGAATCTACTATAATCAATGAAGAATCAGAAATGTTATTATGCCAAGAAAAAGATGAACCCTTGAATCAATCTGCAAAACAAAAATGCACAAAgctgttaaaatataatgttgacGACAATGAAGGCATTGTATCAGATGGTTCAAAACTTGAATCAGAATTAGACCAAGATTGCAATGGAATAGACAAAAATTGTTCGGAACAAAATACGAAATTTTACAACTGCCAAAAATGCTCGTACAGGGGGAGCCACTACTATCTATATGTAGAACATGTCGTAACAAGCTGTGTCAGCGTGTCTTTGTTTTGTTCATTATGCGCCTCGTCCTTTTCAAATCTGACACTCTATGTCCAACATTTAACTTGTCacaattacaaaaagttgaCCTGTCCGGACTGTCAAcaagaatttaaatatcttcattTAATGTGCAAACACATCAAAAGACATTTACGATTCCTCTTAGTAAAACTGCCTAAGTATGGTGTGCCTGCTCTTGACAGTACGTCAAATGTATTTCAGTGTAGAAAATGCGGAACTAAAGTAACCttagaaaaactatttaatcATTGGGAAGCACATTTGAAGATGAAAATGAATAAGAAATCACCAGAAGAGGACATTACTTCCGACGACAATGAAGAATGGAAAAAGACTATGGATCCTGAACTTATACAGGCGGCAGTAGACGTACTCCTTTCAAAAGAGAAAGTAAATATTGTACAATGCATGGTATGTAAAAAGCAGTTCGGCAGACGAAACGAACGCAAGCGGCATTTAATTGAGCATCTACTATCTGAAGCTCTGAAAATCACAGCAAACACTGACAACCAGCTCCGGTGTCAGATCTGCAACATGGACCTTCCGAAAATCGACAACTACAAGCAGCACATGAGGGATCATGCCATGCTGCCGTTGTACAAATGCGATCTGTGCTCCAAGTGCTTCAGCGACTCCAGCAACTTCTCGAAGCACAGGAAAGTGCACAATCAGTTTTCATTTATCTGCGACGTGTGCGGTGGGAAGTTTCGCTCTAAAGCTTGCTTAATTACTCATTTGAAGatgcACGAAAATAATTCAACCAAATGCGAAGAGTGTCACAAGACTTTTAATACTGTATTACAATTAAAGAGACATAAAAAATCTTTGCATATGACTCAACTCAAAACATACCCATGTATGGTCTGCAAGAAACGGTTCTGGAGTTTGAAAGACAAGTGGGATCATTTGTGGTTGGATCACAAACAGAGAAGTGTTAAAGCAGACTGCCCCATATGCAACAAAGCCTATAGGAAAGTGAGAGATTTGAAACAACATATGAAAAATGAACATTTTATCGAGTTAGTATGA
- Protein Sequence
- MDENYEDKSRIRKDLEVEDENILALQANITKLTATIKEEIGDKFFDDNTNNDNEEVSPKPSTIQFSVKVKVEKCGDTENIDVLDDESINSASGTHLEKHSVNDKEIISEDAVIDHQFMNGLSKIPDRPSIIDNRKLSTTSNNEQGIIIRNDSPLFTGSQEQVQCDDYEQQAILDAEIKKGVEMEKALSKVFSVSNAYQKLLEKETEEPMEEDFYEDDLIILDRRDEVTVISDSDSEEPSVKKEIEEFVEEIVKDKIAFKNKKELNYMTNKTVIAKKEPDCDNKAKEKFDLNDVIEKVGDTTKFNKEEELNLNSETIIKDESDWNNISEVNEDYDLNDVTLKVGDVTKTEKEELNLYKTTVIKDEPDWNDITEVNEESTIINEESEMLLCQEKDEPLNQSAKQKCTKLLKYNVDDNEGIVSDGSKHESELDQDCNGIDKNCSEQNTKFYNCQKCSKTVIAKKEPDCDNKAKEKFDLNDVIEKVGDTTKFNKEEELNLNSETIIKDESDWNNISEVNEDYDLNDVTLKVGDVTKTEKEELDLYKTTVIKDEPDWNDITEVNEESTIINEESEMLLCQEKDEPLNQSAKQKCTKLLKYNVDDNEGIVSDGSKLESELDQDCNGIDKNCSEQNTKFYNCQKCSYRGSHYYLYVEHVVTSCVSVSLFCSLCASSFSNLTLYVQHLTCHNYKKLTCPDCQQEFKYLHLMCKHIKRHLRFLLVKLPKYGVPALDSTSNVFQCRKCGTKVTLEKLFNHWEAHLKMKMNKKSPEEDITSDDNEEWKKTMDPELIQAAVDVLLSKEKVNIVQCMVCKKQFGRRNERKRHLIEHLLSEALKITANTDNQLRCQICNMDLPKIDNYKQHMRDHAMLPLYKCDLCSKCFSDSSNFSKHRKVHNQFSFICDVCGGKFRSKACLITHLKMHENNSTKCEECHKTFNTVLQLKRHKKSLHMTQLKTYPCMVCKKRFWSLKDKWDHLWLDHKQRSVKADCPICNKAYRKVRDLKQHMKNEHFIELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -