Basic Information

Insect: Bhutanitis thaidina
Gene Symbol: -
Assembly: GCA_029286595.1
Location: JAGSMS010000012.1:14635719-14641043[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0016 0.1 13.3 0.6 1 23 304 327 304 327 0.92

2 12 0.023 1.5 9.7 2.0 1 19 344 362 344 366 0.92

3 12 3.2e-05 0.002 18.6 3.8 2 23 372 393 371 393 0.97

4 12 4.5e-05 0.0029 18.2 1.3 1 23 397 420 397 420 0.94

5 12 0.44 28 5.6 2.6 1 21 423 443 423 445 0.94

6 12 0.00069 0.044 14.4 0.1 3 23 531 551 530 551 0.96

7 12 0.23 15 6.5 0.2 2 23 571 593 570 593 0.96

8 12 1.6e-06 0.0001 22.7 4.2 1 23 599 621 599 621 0.98

9 12 0.00073 0.047 14.3 2.5 1 23 626 648 626 648 0.97

10 12 0.013 0.87 10.4 3.4 2 21 655 674 654 677 0.93

11 12 2.3 1.5e+02 3.3 2.5 1 19 685 703 685 708 0.88

12 12 0.067 4.3 8.2 5.4 3 19 717 733 716 738 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0016	0.1	13.3	0.6	1	23	304	327	304	327	0.92
2	12	0.023	1.5	9.7	2.0	1	19	344	362	344	366	0.92
3	12	3.2e-05	0.002	18.6	3.8	2	23	372	393	371	393	0.97
4	12	4.5e-05	0.0029	18.2	1.3	1	23	397	420	397	420	0.94
5	12	0.44	28	5.6	2.6	1	21	423	443	423	445	0.94
6	12	0.00069	0.044	14.4	0.1	3	23	531	551	530	551	0.96
7	12	0.23	15	6.5	0.2	2	23	571	593	570	593	0.96
8	12	1.6e-06	0.0001	22.7	4.2	1	23	599	621	599	621	0.98
9	12	0.00073	0.047	14.3	2.5	1	23	626	648	626	648	0.97
10	12	0.013	0.87	10.4	3.4	2	21	655	674	654	677	0.93
11	12	2.3	1.5e+02	3.3	2.5	1	19	685	703	685	708	0.88
12	12	0.067	4.3	8.2	5.4	3	19	717	733	716	738	0.92

Sequence Information

Coding Sequence: ATGGAGCAGGAGGTATTCACGATGGACGCGGAGGTGCTGTATCCGGTGCTGCTTATACCTAAGAAGTGTACGACGCTGGAAACCACCTGTCAAGCCACCGACGACGTCTTTATAGACCTCAGCGTCACGTCAACGGACACCGAAGGCAATGAAATGTGCCTGTACTCGGGTTTCTGTAACGTCAAGCTTATAGACAGTTATGACGTTAATGTACGCGAAGTGGAATCGACCACGGCGTCAGAGTCCAATGATAACGAACAGATATTGGCGGCAAACGAAACGATCAATCCGTCCACTTATCCTCAGTACAGCCAGTCCCAAGTGTGGATAGATCCAGCAAGGAGTCCTTTCGTGTATAACAATTCCGATGCGCCCGAATCTCAGGAGCGATACGCCGTGCGCCATCAAACCCATTCCAGTCACATAACCGTCGAACAACACAACACGTACATTAcacaaaatgtatataattattcagAGCCCATTAATTATTCACCGACCAATGAATTCGAGCATAAGAAGTTCAGAAAGATACAAGCGTGCGATACAAACCAACAAAGCTGCTCGGGCGAACCTAACAATTTGTACGTGGACGACGAATTTGAATGTGGAGTGTTCCTGTCACAGCTTTCTGAAGAAATGATAAACGAGAAGGAGACCAGGGCCAGGGAAGAGGTGCGTTACGTCGGTTTGCAGAGCGAGAATGATGCATTGAAACAGTTGATGTCGTCAGACATACAATCGTTGTCCAAACAGCAGAAGACTATTCTATTCTTGGGCCATGACTCTCACTTTGGGCAAACCATTCAGAAGATAGCCGTGAACGATCCGTCCTTGGAGTGTGTCGGAGGAGGTGAAACTGATCAAGAAATAGTCGTtgAGAGCAACAACAAACCCCACCAAAAGAAATACCAATGTGACAAATGCAagcaaatatttgaacaaattgCAACGTTCAAGCAACACATGGTGGGAAGTCATAGGAACGGCAAGGAAGTCTGCGCCCCCAGCTCCGAAAGCGAAGTGAAGTTCATGTGCACCGAATGCGGGAAGAATTTGAAAACGCAGGAGAAATTCGAGATGCACTGCCTCGGCCACGGCGATCCCGAACTGGAATGTAACAAGTGTCACAAAGTGTTCGCATCGAAGTTCACGCTTCGTACGCATCGCAAGATACATTTGCGCAAGCACCAATGCGATTACTGCACGAAGACGTTTCCGAAACTCGAAAATTTACGAAGCCACGCCGCCAAAGCGCATTTCGTTTTCATGTGCGACACGTGCGATTACACGGCTAATAAATATCAAGATTTGGAGACGCATCTGAAATGTCATACGAGCTCGCGGGAAAACAGCGACAGCGACTGCGACTGCTGCATGTCGTACGACGACCTCAACACGGATATAGAGACCGTCGCGCCATTGTCGTCCGCCGAGGATCAAGATCTGAAGTCCGAAAATGTCACAGAAAATTACGCAACCCGCGAGGAGATAAGGAAAGCGGACTCGGTCATAGCTAAAGTGATGTCTAATAAAGTTTTTCTGCTTCACGCAAAGAAGGCCAGGAGACACAAACGTTATAAAAAGGCTTGTGATGTCTGCTTAAAATCCTTCGACCGGATCGGAGACCTGAAGAGGCACCTCATAGAACACGTCATTAGGAGCACTCTAGCCAAAAATCCGGTGAACAAAAACGGCACCCTCAACATCCAGTGCGAGGTATGCCAAATAGAAAGCTTCTCTAAAGTGGACAGATATAAAGCGCATCTACGTGAGCACGCAAAATTAACGTTATACCAatgtacattttgtaataaatcgtTCAGCGACTCCAGTAACTTCTCGAAACACAAGAAAATTCACGGCTTAACTTACTTCCAGTGTGATCTTTGCCAGAGGAAGTTCAACTCTAAGAAAATGATCACACAGCACATGGATTATCACAACAAGAACTCGCCGATACCCTGCTTCTATTGCAACAAGGAGTTTCATTTCGAATCTATGTTGAACAAACACATCAAATGCGCTCATACTAAAGAAATGACAACTAGGTTCCGTTGTAGATTTTGTCATCAATATTTCAAAACGTTAAAAGAAAAATGGGACCACGAATGGACCGTTCACAACGTTAGGAAAATGATTGTCGATTGTCTCATATGTGGTTGTAAGTTTAGGAAATATTCCGAATTGAAAAGACATTGCAATGATACTCATGATTTGGATATACCACCAGCCAAAAAGTTGCTAAGGAAAGAGAGTTCCTATTATagtcaaaataatttgtaa
Protein Sequence: MEQEVFTMDAEVLYPVLLIPKKCTTLETTCQATDDVFIDLSVTSTDTEGNEMCLYSGFCNVKLIDSYDVNVREVESTTASESNDNEQILAANETINPSTYPQYSQSQVWIDPARSPFVYNNSDAPESQERYAVRHQTHSSHITVEQHNTYITQNVYNYSEPINYSPTNEFEHKKFRKIQACDTNQQSCSGEPNNLYVDDEFECGVFLSQLSEEMINEKETRAREEVRYVGLQSENDALKQLMSSDIQSLSKQQKTILFLGHDSHFGQTIQKIAVNDPSLECVGGGETDQEIVVESNNKPHQKKYQCDKCKQIFEQIATFKQHMVGSHRNGKEVCAPSSESEVKFMCTECGKNLKTQEKFEMHCLGHGDPELECNKCHKVFASKFTLRTHRKIHLRKHQCDYCTKTFPKLENLRSHAAKAHFVFMCDTCDYTANKYQDLETHLKCHTSSRENSDSDCDCCMSYDDLNTDIETVAPLSSAEDQDLKSENVTENYATREEIRKADSVIAKVMSNKVFLLHAKKARRHKRYKKACDVCLKSFDRIGDLKRHLIEHVIRSTLAKNPVNKNGTLNIQCEVCQIESFSKVDRYKAHLREHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGLTYFQCDLCQRKFNSKKMITQHMDYHNKNSPIPCFYCNKEFHFESMLNKHIKCAHTKEMTTRFRCRFCHQYFKTLKEKWDHEWTVHNVRKMIVDCLICGCKFRKYSELKRHCNDTHDLDIPPAKKLLRKESSYYSQNNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -