Btha016924.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000038.1:1942412-1951309[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.063 4.1 8.2 0.2 1 23 248 271 248 271 0.90 2 10 0.036 2.4 9.0 0.2 1 23 303 326 303 326 0.96 3 10 0.0026 0.17 12.6 2.1 1 23 369 392 369 392 0.94 4 10 5.2e-06 0.00033 21.1 2.5 1 23 396 418 396 418 0.98 5 10 0.095 6.2 7.7 0.2 2 23 426 446 426 446 0.96 6 10 0.0011 0.071 13.8 1.4 1 21 452 472 452 477 0.93 7 10 3.9e-06 0.00025 21.5 0.9 1 23 485 508 485 508 0.97 8 10 0.00056 0.036 14.7 3.9 1 23 514 537 514 538 0.97 9 10 8.4e-05 0.0054 17.3 0.4 3 23 549 569 548 569 0.94 10 10 4.2e-05 0.0027 18.2 2.0 2 23 576 598 575 598 0.96
Sequence Information
- Coding Sequence
- ATGGATGATAGCACGGaagttattttaagaaaatattgctGTACTTGCTTAAGTTACGAAAGAAACTTGTTTCAGTTATGTAGAATTTCCGATGGagtcaataatttatattggcTATTGTCATACGATTTGGAAGCTTACAGGgaaGGTTTTCATAAGGACACTGCTAATCTTTACATATGCTGGGAATGCAAGGCTATAATGTCAAGGATATGTGGCTTTCGAACTCAGGCTTGTGCAGCACAAAAACAGTTGACACTCATCGCCGAAGGACAAAGTGGTAAAGCATTAAAAATCCTGTCAAGTCTATCACGCTCATTAAAGATCACTTATGactgtataattgtatataaagaTTCACCAGAactaattgataattttatagaCTGTGGACCTATAACAGAGATAAAAGCAGAAAGTGATATAGATGAGATTCCTTTAGCTGAGCTACATAGTAATTACATGTCTGAAGATAGTGAAAAAGTggatgtaaataaaactactcTATGTAAAGTTACTAAAAGTCGAAATTCCAATGACTCAGTTAAAAAACCAAAgcttaatagaaatttaagacCAGGAAGGACGAAGTTAAAAGACAACAAGGTTAAAGGTTCAAAGGAAATTAGTACTTTAACTGATAATGATATGAGATATTATTCCTTGATTGAAATGAATGAGAAAGAAATGTCTGAAAGCAGAACTATGAGGAAGTTGGTTGTGAATTATGCAGATGCTGCATTCAAATGTGAATCTTGTGTTCAAGGTTTTAAAGTGGAAATGGAGTTAAATAGGCATAATTTAGAAGTGCATACACAGAGAGACAAACACAGTCAATGTGATATATGTCAATCTTATGTCAAAATACCACATCTAATGGTGCACAGGAAgaagcattatttaaaatttaactgtcAGTTCTGTGACTTGGTGACATATGACTTAGACGATATCTTGAGACATTTGAACAGTGGTCATGCTATGAAAAATCTAGCTGTCCCCATACCTAGGGAAAAGAGAAAAGTTAAAACAACGGTGATTAAAAATTCCGGCTCGAAGCCAAGGAAGAATAAAATCTCGAAGGACCAACGGACGCCTTTTGGATTTTTATGTACggaatgcaataaatattttgacaaCAAGAACTTAAGATGGAAGCACATTCAGAAGTACCACCGTGACGGTTTCAAATGTTCTACATGCGGGAAGAAGTTCCCGTTTAAGAACAATCTGAGTAGGCATGAACAAATGCACACATCGCCACCGCCGCGCGAGGAGTGCCCGGTGTGCCACAAGCAAGTGCGCGCGGACCTGGTGCGCGTGCACGCGCGCATTCACGGCGAGCGCGAGCGGTTCGCGTGCGTTCAGTGCGACAAGAGGTTCGCGAGCAGGGCATCGTACGAACATCATCTCAAGTACACGCTCACGCACGCGGTGAGCGATATACTGAAGTACAAATGTTCGATGTGCGACAAGGGCTACAGATCGAAAGGGGAGCTGAGGGATCACATCAACTACCAGCATATGGGGAAGACGCAACACAAATGTCCTATATGCGGAAAGGCGCTGGCCACCCGACGTTGCATCACGCGCCACGTGCGCCGCGCACACCACGGCATCAAGGAGAGCGAAAGGGACAAGATATGTCAGCAGTGCGGCAAGGCTTTCAGGgaCAAAAAAGGGCTACGAGAGCACGAATTTATACATACAGGGGAGCGTCCACTCTCATGTGAAATATGTGGATGCACATTCAGACAAAGCGCATcattatatacacatagaaaGAGAGTCCACAAGATATGTCCGCAGAAGAAAAATGTGGAATTAATGGATAGTGATAATCCAACTACAACCTCGTAA
- Protein Sequence
- MDDSTEVILRKYCCTCLSYERNLFQLCRISDGVNNLYWLLSYDLEAYREGFHKDTANLYICWECKAIMSRICGFRTQACAAQKQLTLIAEGQSGKALKILSSLSRSLKITYDCIIVYKDSPELIDNFIDCGPITEIKAESDIDEIPLAELHSNYMSEDSEKVDVNKTTLCKVTKSRNSNDSVKKPKLNRNLRPGRTKLKDNKVKGSKEISTLTDNDMRYYSLIEMNEKEMSESRTMRKLVVNYADAAFKCESCVQGFKVEMELNRHNLEVHTQRDKHSQCDICQSYVKIPHLMVHRKKHYLKFNCQFCDLVTYDLDDILRHLNSGHAMKNLAVPIPREKRKVKTTVIKNSGSKPRKNKISKDQRTPFGFLCTECNKYFDNKNLRWKHIQKYHRDGFKCSTCGKKFPFKNNLSRHEQMHTSPPPREECPVCHKQVRADLVRVHARIHGERERFACVQCDKRFASRASYEHHLKYTLTHAVSDILKYKCSMCDKGYRSKGELRDHINYQHMGKTQHKCPICGKALATRRCITRHVRRAHHGIKESERDKICQQCGKAFRDKKGLREHEFIHTGERPLSCEICGCTFRQSASLYTHRKRVHKICPQKKNVELMDSDNPTTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -