Btha004382.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000007.1:3329317-3332993[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.4e-05 0.0022 18.5 4.0 1 23 311 333 311 333 0.97 2 12 6.4 4.2e+02 1.9 0.2 5 14 438 447 436 451 0.84 3 12 0.00057 0.037 14.7 1.0 2 23 467 489 466 489 0.95 4 12 0.00034 0.022 15.4 1.3 1 23 493 515 493 515 0.98 5 12 0.0048 0.31 11.8 0.3 2 23 537 559 536 559 0.92 6 12 0.001 0.068 13.8 1.7 1 23 563 586 563 586 0.97 7 12 0.055 3.6 8.4 0.2 2 23 609 631 608 631 0.93 8 12 4.1e-05 0.0026 18.3 2.6 1 23 641 663 641 664 0.96 9 12 0.0066 0.43 11.3 1.3 2 23 680 701 679 701 0.96 10 12 0.019 1.2 9.9 0.8 1 23 707 729 707 729 0.93 11 12 1.2 76 4.3 5.0 1 22 735 756 735 759 0.90 12 12 9.2e-06 0.00059 20.3 1.1 2 23 822 843 821 843 0.97
Sequence Information
- Coding Sequence
- ATGGCATTGCAAAATATTTCACTGCCAGATAGTAATATCCCTGAtgacaattcaaataaaataaccataaaaCAAGAAACTCACAATCTGGAAGTTAGTGAGGATATACAAGTTAAAActgaattacattttaatgaggACAATGTATCAATTGATAATCCATTTGAAAATATACAGCTTCAAGTCAAGCAAGAATATGCAGCATCTCCAACAATTGAAAAACAGACACAGTATGAAATTGATTATGATCATTTTTCCATAACCATTGAGAAAGAGAAGGAGGAGTCTGACAATGACACAACACAATGTTGTTTGGTAGCACACGCAAAgaaaactaaacataaaattcGAGAAGAAACAATAACCAACATGTATGATGACAATTTAGAAATCAAACAAGAAGTAGAGTTAGAAGGGGATTTATATGGGTATACCAACTTTGATGACACTCGTAGCATGGATAGTAATGAAGCCAAAGCATTGAACAATGTTGAGGCATGTCTACAAGATgagattaaaataaagtgtGAAAGTGAGTTATTTGAGACAAGTCTAAAGCACAGCCAGGAAAAGATGACCATAAAGGATGAAATGGAATTGACAGTTACAGAAACACATTTGATTTCTAACAAACTTATTAACACTACGTCAACAGTGACCAATCCGCAGGATGGATTGACGAAAtcacaaacaacaaaaactttAGTTATGGAAATACTGCCAATGACACATACAGGTTGCGTGTCGCTGAGTAAAATTGAAAACCCGGAGGAAATATTACCCACGTCGTACACAAATGACGAATGTACTCCAATGGACTACGACGACACGTATCAACTTAACTCGATAACAGGTAATGTTATGTCGTTAGAGCAGGAGGCCTTCGGTCTTCTAAAAGCGAAACGTAAAATAGATAGATTGGATAGACCACATGTTTGCACAAAATGTCCAAAGGCGTACAAATCCGCGAATTGTTTGAAAAAACACATGAACGTTCATGAGAGTATTGAAAAACGAGCTATGGGAATTATTAAAGGCCAGAAGACTAGAATAGCTAACATGAAGAAAAAATTGAAAGAGGTGGAAGAAACTTACACTCCCAAGGTAAAAGAAGAAACATTTAAGCctaaggtaaaaaataaaacatttccgCACAAAGTTAAAGATAAAACATATACGCCCAAGGtaaaagataaaacaaatacaccCAAGGTAAAAGATGAACCAAGTACGGCCAAGGTAAAGGTGGAAAATGGGATGGATAATGTGAGCAAGTTAGTTGacaatgttaaaaaagaagGCTATGAATGTACTTGTGGAAAGGTTTTCCAACGCAGAAGTCGTATGGAGACTTGCTTGAGATCCCACAACATGTCCTCGGATCAGATTTCATATTTACCATGCCTTACATGCTCTAAACAATTCAAAGATAAAGTGGAATTAACACTGCATCGTAAAAGATTGCACCGCAAGCGATTTCCGTGCAAGTTTTGTCCCACAGACTATAATACACGAAAGGAATTGTTTAAGCATTTACAAATACATCAGAAAGTTCAAGTGATGGAGTATAAGGTACTTTCGGAGGTTGTGAAAGgcaaacaaaagttaaaatgtttcatGTGTGCGAAATCTTACTCGGAGCTGTCCGAACTGAAGTCGCACGTGATGGACGACCACAAGGAGCCCTACGTGTGTCCGCATTGCAGCCGCACGTTTTCTAAAATCATCGACTTCGGTAACCACACGAAAACCGATCACCCGGAAGTAGAAGGGCAGTCGGTGTTGGACGTCCTAGAAGCCTTCTCCAAATTGGTTAAGGCGTGGAAATGCGAGGAATGCGACGTGCAATTCCACGAGGCTGATAAACTAGCGCTTCATCAAATAGAAAAACACAGCCCCGATTTGAAAATAGAACCACAGTTTCAATGTATGGACTGTCGAAGAGTATTCATAAGTCAGAAAGGTTTAACATCACACAGGCGAATCCATCACAGCGTAGAAACACCGGACGACACTGAATTGGTTGAAAAGGGTGTTATGTGCGTCGAATGTCGAAAGATCTGTAAAGACACGAACGCATTGAGTTCACACATGCGACTGCATTCACTGGAACGTAAGTATCCATGCAAATTTTGTGATTTTCGATTCGCCACGCCCGAGAAAAGAAAAGCTCACTCGGAATTACACACCGGGGACATGAAATATGTGTGTTTTATATGTGAATATCAATGCAGTTCAGAGAATCGATTAAAACACCACAAGATGTCGATGAAACATCTAAATATGAAAGAGTTTCTGGCGACTGGAAAGCCATTAATTGATGAGGAGCAATCGACGtctaagaaaacaaaaatcgaAGACGCTTTAGAAAAAGAAGAATGGGTAGTAGTTAAGGagaacgaagaagaagaagaagaagaagacagcGGCGAAGATTCTTCATCCAACAATGGAGGGGAATCTACGTGCGACATATGCGGTAAGAAATTTGAGAGTGAATCTAAAATGTTAAGGCATCAAAATACACATCCATTTATAGAAATTCCTAATGATGATAAGCCtactagaatattttttaaataa
- Protein Sequence
- MALQNISLPDSNIPDDNSNKITIKQETHNLEVSEDIQVKTELHFNEDNVSIDNPFENIQLQVKQEYAASPTIEKQTQYEIDYDHFSITIEKEKEESDNDTTQCCLVAHAKKTKHKIREETITNMYDDNLEIKQEVELEGDLYGYTNFDDTRSMDSNEAKALNNVEACLQDEIKIKCESELFETSLKHSQEKMTIKDEMELTVTETHLISNKLINTTSTVTNPQDGLTKSQTTKTLVMEILPMTHTGCVSLSKIENPEEILPTSYTNDECTPMDYDDTYQLNSITGNVMSLEQEAFGLLKAKRKIDRLDRPHVCTKCPKAYKSANCLKKHMNVHESIEKRAMGIIKGQKTRIANMKKKLKEVEETYTPKVKEETFKPKVKNKTFPHKVKDKTYTPKVKDKTNTPKVKDEPSTAKVKVENGMDNVSKLVDNVKKEGYECTCGKVFQRRSRMETCLRSHNMSSDQISYLPCLTCSKQFKDKVELTLHRKRLHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQVMEYKVLSEVVKGKQKLKCFMCAKSYSELSELKSHVMDDHKEPYVCPHCSRTFSKIIDFGNHTKTDHPEVEGQSVLDVLEAFSKLVKAWKCEECDVQFHEADKLALHQIEKHSPDLKIEPQFQCMDCRRVFISQKGLTSHRRIHHSVETPDDTELVEKGVMCVECRKICKDTNALSSHMRLHSLERKYPCKFCDFRFATPEKRKAHSELHTGDMKYVCFICEYQCSSENRLKHHKMSMKHLNMKEFLATGKPLIDEEQSTSKKTKIEDALEKEEWVVVKENEEEEEEEDSGEDSSSNNGGESTCDICGKKFESESKMLRHQNTHPFIEIPNDDKPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337977;
- 90% Identity
- -
- 80% Identity
- -