Btha017322.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000040.1:1739917-1745128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.19 12 6.7 0.4 2 23 9 30 8 30 0.95 2 22 0.0019 0.12 13.1 2.1 1 23 35 58 35 58 0.94 3 22 0.93 60 4.6 4.5 3 23 69 90 68 90 0.94 4 22 0.013 0.81 10.5 5.3 1 23 96 118 96 119 0.93 5 22 0.00048 0.031 14.9 2.2 1 23 123 145 123 145 0.97 6 22 0.36 23 5.9 2.9 1 23 198 220 198 220 0.98 7 22 0.0031 0.2 12.4 0.0 2 23 248 270 247 270 0.92 8 22 0.019 1.2 9.9 4.2 1 23 293 315 293 315 0.98 9 22 0.018 1.2 10.0 0.4 3 23 321 341 320 341 0.95 10 22 0.00065 0.042 14.5 0.8 1 23 346 369 346 369 0.93 11 22 0.26 17 6.3 3.4 2 23 379 401 378 401 0.95 12 22 0.058 3.8 8.3 0.0 1 17 407 423 407 424 0.94 13 22 0.5 32 5.4 0.7 2 23 515 537 514 537 0.90 14 22 0.19 12 6.7 1.8 3 23 562 582 560 582 0.91 15 22 0.00051 0.033 14.8 3.7 1 21 586 606 586 611 0.94 16 22 2.3 1.5e+02 3.3 0.3 3 23 650 671 648 671 0.93 17 22 0.018 1.2 10.0 0.2 2 23 697 719 696 719 0.95 18 22 0.083 5.4 7.9 4.1 2 23 743 764 742 764 0.96 19 22 0.00025 0.016 15.8 0.0 1 23 768 791 768 791 0.97 20 22 0.013 0.86 10.4 0.4 1 23 795 818 795 818 0.98 21 22 0.00038 0.024 15.2 1.8 1 23 857 880 857 880 0.96 22 22 0.017 1.1 10.1 1.4 1 23 890 913 890 913 0.97
Sequence Information
- Coding Sequence
- ATGAATTGCCATGTTGGGAAGGTGGTATGCGAGAGCTGCGGCGCTGGCTTCTTGAATCAACATCTATTGTTGAAACACAAGGAGTCGCATTTGACGAAACGGTTCATTTGCAAGTACTGCGATAGAGTATTTTTCAAGAAGAGCCAGCAAAAGTATCATACAGAGATCGTGCACAAAGGCAAGGATAGAGTTAAACTTAAAAACTGTCAACATTGTTCTCAGACTTTCAAGGAGCACTATAGTAAAATGATACATTTGAAAGAGGTGCACGGCATCATTAAGACATTTCTTTGTCATATTTGCAGAACCGACTTCAGTACGCGTCGTGCCCTGACAGAGCACACGACTAAACATCACACGGAAAAGTTCAAATGCGAATTGTGCTCTAAGTGTTTCGGAATTGAGTCGAAATTAAAGCAGCACATGCTCGGGCACAGTGGTGAGAGGAATTTCGTGTGCCCAGTATCTCCCGCCAGGGTCCGCACCGCAACGAGCATGTGGGCGATGACATTGTCGGAAAGGGAGAACGCGGCGAATTTCCTACTGCACACAACTATAGTTCCATTCACTTACCTCTCCTACCCTTTCTCCTTTAAATGTTTCTACTGTACCGATAAATATTCGGAGCTGTCGAAACTATTGGAACATTCCAGAAAACATGCAGTACCAGAAAGGTCCGTGCTAATGAAAGATTTCCTAAAGAAAGGGAAAAAAACTATCAAAGCGGACATGTCCAAATTGGAATGCAAGATTTGTAACGTCGCATTTACGAATTTGGATGACGTCCGGGAACATTTGAGCGGTGTGCATTGTAAACAATTCACGGAAGCGGGAAACGGTATCATCGCGTTCTATTTACAAACGCAGAATGACGTTTACTCGTGCCACATGTGTCCGGATACATTTCACAGCTTCTTCCTTCTAAACAAGCATATCAACGTGCATTACAGTAACGCGATCTGCGAATCTTGCGGCAAAGGATTCGTATCGCACGCTAGGCTCTTACAGCACAAAGCGATCCACATCACGGGGCAGTATCCGTGCGATAAATGCAAAAAGACTTTTGCCAGTTTGCCGAAACTCAAATATCACACGGGCAGGGTTCACGGAGAATCGATCAAAGTTAAATCGTCCAAGTGCCAGGTGTGCGAGGCGAGATTCGAGCATCACTATGAAAAGATTAAACATTTGAGAGATTCACACGGGATGTCGTATAATTACCCGTGCGAGATCTGTAAAGTTGTGTTCGACACACGGGCCTCGTTGAAAATATGCCGACGTGGTGGCGTTCAGCCAAAAGCGAAAATAGTTCTCGTATACCAGACCCCACAAAGGCGCAACGCCGAACTGATACTAAAACATTCCACAGCTTACCCTTTCAAAACACGCTTCAGTCAGATCCTATGCGCCTACTGTCACACTGAACACGAGCTCCTGCCAGAGTTGAAGTGTCACATGGAAAGCGTACACGTCGACGCCGATTTCAAAAACGTTTTCTATagaatgaaagggaatttgatCAAAGTGGACATTAGCGATCTGCGATGTAAGATTTGTTGCCAAGGGTTCGCCGACATCGATGCTCTGATGAGACACTTCTCGCAGGAGCACGAGCTGCCGGTGAAACTTAACGCGTCCTTCGGAGTGCTGCCCTACAAGCTTAACTCTGATAACAAATGGACATGCGTCTGCTGTACCAAAACATTCGTGCCCTTCATCGACTTCAAGCGTCACATCACCACCCATTTCATGAGCTACAATTGCGACAAATGCGGAACAACTTTTGTGTCGTACCATGCTTTAAGGGATCATCAACGTCAGGTGAAATGTCACCGTATGTCTTACAAGGCTCGTAATGGGCGTGTCATGAGGCCGCGTTGCAACGCGGAAATAATCCTCCAGTGCTCATCCGCGTACCCTTTCAGAACTTGGATGAGCAACTTGAACTGTGTCTTCTGCAGGGTCAAAACCAGGGATCCGGTGGTCTTCCGCAACCATATGGCATCGCAGCACGAAACGTACGATGTTCAATCGGCGTTCTACAAGAAACTAGGCAAGGCCTTTCTTAATGTTGACATAACGGACCTTCAGTGCAAACTCTGCTCCAGATCTATAGACAACTTCGAGGACCTCATTGCACATCTGAAGAACGACCACCAACAACCGATCAGCTCGGACGCGCAGTTTGGCCTGTTGCCGTTCAAGTTGAACGACGGCTCGTCGTGGAAGTGTGCGATGTGCACCAACCGGTTCAAGGACTTCATGTCCCTGAAGAAACACACGCACAGTCACTTCCAGAACTACGTTTGCGACACATGCGGCGAGGGTTTCATCACCGAGTCCGCGATGATAGCTCACACCAAGATCCCCCACGAGAACAAGTACAGCTGCAGCCGCTGTGTGGCCACCTTTTCCACGCTCGAGGAGAGGAATGCCCACGTCAAGACGCAGCATACGTCGACGCCTTACGTCTGCGTCTACTGCAAGGACAGGCCGCGCTTCGGGACTTGGGAGATGAGAAAGAAGCATCTGCTAGAGGTCCACAGCTACGGCGCCGTGGACGATAGGTATGACTGCACGGTCTGCCAGAAGTCGTTCAAGTCACGCTCCGGGAAGTACAATCACATGGCGCGAACACACCGTGTCGTCAAGGATTCGGAGCTGAGTTATACGTGCACGAGTTGCGCCAGGGCGTTCACCAGCCAGTTGTTTTTGGATAAGCACATTTCAAAGAAGCACAGCGATGGCTGA
- Protein Sequence
- MNCHVGKVVCESCGAGFLNQHLLLKHKESHLTKRFICKYCDRVFFKKSQQKYHTEIVHKGKDRVKLKNCQHCSQTFKEHYSKMIHLKEVHGIIKTFLCHICRTDFSTRRALTEHTTKHHTEKFKCELCSKCFGIESKLKQHMLGHSGERNFVCPVSPARVRTATSMWAMTLSERENAANFLLHTTIVPFTYLSYPFSFKCFYCTDKYSELSKLLEHSRKHAVPERSVLMKDFLKKGKKTIKADMSKLECKICNVAFTNLDDVREHLSGVHCKQFTEAGNGIIAFYLQTQNDVYSCHMCPDTFHSFFLLNKHINVHYSNAICESCGKGFVSHARLLQHKAIHITGQYPCDKCKKTFASLPKLKYHTGRVHGESIKVKSSKCQVCEARFEHHYEKIKHLRDSHGMSYNYPCEICKVVFDTRASLKICRRGGVQPKAKIVLVYQTPQRRNAELILKHSTAYPFKTRFSQILCAYCHTEHELLPELKCHMESVHVDADFKNVFYRMKGNLIKVDISDLRCKICCQGFADIDALMRHFSQEHELPVKLNASFGVLPYKLNSDNKWTCVCCTKTFVPFIDFKRHITTHFMSYNCDKCGTTFVSYHALRDHQRQVKCHRMSYKARNGRVMRPRCNAEIILQCSSAYPFRTWMSNLNCVFCRVKTRDPVVFRNHMASQHETYDVQSAFYKKLGKAFLNVDITDLQCKLCSRSIDNFEDLIAHLKNDHQQPISSDAQFGLLPFKLNDGSSWKCAMCTNRFKDFMSLKKHTHSHFQNYVCDTCGEGFITESAMIAHTKIPHENKYSCSRCVATFSTLEERNAHVKTQHTSTPYVCVYCKDRPRFGTWEMRKKHLLEVHSYGAVDDRYDCTVCQKSFKSRSGKYNHMARTHRVVKDSELSYTCTSCARAFTSQLFLDKHISKKHSDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -