Btha016653.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- rst2
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000037.1:1064637-1075638[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0091 0.59 10.9 0.0 3 23 142 162 140 162 0.97 2 10 0.002 0.13 12.9 2.9 1 23 287 309 287 309 0.98 3 10 7.2e-05 0.0046 17.5 1.2 1 23 315 338 315 338 0.96 4 10 0.019 1.2 9.9 6.1 1 23 343 366 343 366 0.93 5 10 5.7e-06 0.00037 21.0 0.7 2 23 534 555 533 555 0.98 6 10 0.00017 0.011 16.3 3.3 1 23 561 583 561 583 0.98 7 10 0.00018 0.012 16.2 1.2 3 23 658 678 657 678 0.97 8 10 0.038 2.4 8.9 5.5 1 23 695 717 695 717 0.96 9 10 1.5e-06 9.4e-05 22.8 0.6 1 23 723 745 723 745 0.98 10 10 4.2e-07 2.7e-05 24.5 3.1 1 23 751 774 751 774 0.98
Sequence Information
- Coding Sequence
- ATGAATCTAAATACAGGTGTCGAAGTTGATCCATTAGCCACTTATGAATATCCCACATTTGGTAACTATGCTCAACCACCAACAAACCAAAATTCTATACCGTACCAAAATAGCAATGCCTCATACCAGAATTTTGACGCTAAACATGAAGCATATACGCATCCAACGGGCTATGTAAATAGTTGTGGTGGGGAATCAACTGCTACCAATACCGAGACAAAAGAAGGAGAAACTGTTATTGCAACAAATAGTATAAGTACATTAATCGAAAACCCATGTAACATTAAAGAAAACTCGgtagaaaataatcaaaataatgataattctGTAGtggataaaaaatttaaaagggaacataaaaatggtaaaaaaagcAATTACTTATCGGAAAAAATAGCAGACAGTGACTTTCCGTTCTACGGTTGTGCAGTCTGtgatattagttttaaattactaGCTGATTTAGACCAACATATAGCTACACATAAGGACAGAATAACAAGTTACGGCTTGAGACTGAAGAATCAAATTAAAAGGAAGAAACTGAGAAAAGAACAAAAGAAGTTGAAGAAGTTAAGCAAAGCAATAAAGAAGGAGAAGGAATTAAAAGTAGAGATTGAAATAAAACCGGAAGAAGGATACATAGGTGACACGAAAGCTGTAGATTATAAGCCCAACTGTGAGAACAATTGTAGCGATTATAAAAACGTTTCCAATGAACCGATGAAGTATGAGAATGGACTCGTAGAAAATCAGTCTAAGTTCCAAAACGAGGTGTCCGAgagtaaagaaaatgaaaatgaaaaagatacaatgctcaatgataaACACCAAACAGATTATAACTTAGAAAAGATGTTTAAGTGCTTCGCTTGTCAAAAACAGTTTACATTAAGCTACTACCTCAAATTACATGTTAGATCCCATACGGaTGAGAAACCCTACACCTGTGCTGAGTGCGGACAGTGCTTCATAACTGCCAGCAAACTGGGACGTCACAACAAACGGATCCACTTGGCCATTCGACATCAGTGCAGGATCTGTTACAAATACTTCTCTAGATTTGAATATTTAACGAGGCATTTTGACAAGAAGCATCCCGAAGACAAATTAGAAGGCGAACCTTACGATTACAACGCCATCTTGCCGTACCTGAAAGAACTAGAGGAGCAGCTACAAGCGAAGACGGACGAACGGACGCAAGATCAAGACACGAAGCCGAAAACTGAAAACCTATGGGACGATTGGCCGAAGGTAGAGCCGCAGATATCCCATGGGGCGGATCAGCGAGGAGCGGCCGAAGTGAAGCTAACCGAAGACAGCAAAGACTTTGTATTGAATCGTTCGGTGAATACGGACGGAAAGAGAGAGGAGTTCTGCTTCGAGGTGGCGGTGAAGAAGGAGGTGGAGGACAACGGGGCGGACAACGGAGATGAGGCGGCGGAGGACGACCTGAAGGAGGACAGTATGAAGGAGGAGAGCCTCTCCGACGAGGATTACTTCCCGTCGAACACGTGGGCCTCCACGCCCAAGGTGGAGGAGGCGGACGACCCCCCCGCCGCGAGCCGAGCGCGACGGCAGAAGGCGGACGGCCCGATCAAGTGCAAGGTGTGCGACAAGAACATCAGCTCCCTGTCCTACCTGAGGATACACATGCGGACCCACACGGGGGAGAAGCCCTTCAAGTGCTACATCTGCAACCGCGGCTTCATCACCTCGAGCAAGATGCACCGACATGTGCTCACGCATACGGAGACCTGGGACGATGCGGCGAACATCAAGGCGGAGATAAAGTCGGAGACGGATTCGGACACGCCCCTAAAGAAAATGAAACGCAGCAAGGAGATTGTCGAGGAGAACCGCAACGAAATACTGGCCATGGTGCTCCAAAACGCCCGGAGAATACCGAAGCACCCGGACGCTGCCGGGAGCTTGACCGACAAGGTGCTGTCGGACGAGCAAAGCCGGATGTGCAACATATGCGGCCAGGTGTTCCAACACTTCTATTATCTGGAAGAGCATCTCAAAAGTCACGGCTCGAAGATCGCTCTAGAAGACGAGGAGAAGGCCGAAGAGAAGAAGCACGTGTGCCAGGTCTGCAACAAGGGCTTCAAACTTCACTACTATTTGAAGTTACACAGTTTCACACACACGAAGGAGAAACCTTACATCTGCCAGCAGTGCGGCAAGGGATTCATCACCAGGGGGAAACTCAAGAGGCACCTCGAAACCCACACGGGCCTGAAGAAGTACCAGTGTCATATATGTTACAAGTTTTTCACCAGACCGAGCTACCTGAGGATTCATGTCAGGACTATACACGGGACGCAGGATTACAACTTCAGGCTGGATAAGCAGTTCGGGGTCGGCAGCATGACGGCGACCGGCTTGGGTCAGGCCGTGTAG
- Protein Sequence
- MNLNTGVEVDPLATYEYPTFGNYAQPPTNQNSIPYQNSNASYQNFDAKHEAYTHPTGYVNSCGGESTATNTETKEGETVIATNSISTLIENPCNIKENSVENNQNNDNSVVDKKFKREHKNGKKSNYLSEKIADSDFPFYGCAVCDISFKLLADLDQHIATHKDRITSYGLRLKNQIKRKKLRKEQKKLKKLSKAIKKEKELKVEIEIKPEEGYIGDTKAVDYKPNCENNCSDYKNVSNEPMKYENGLVENQSKFQNEVSESKENENEKDTMLNDKHQTDYNLEKMFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAECGQCFITASKLGRHNKRIHLAIRHQCRICYKYFSRFEYLTRHFDKKHPEDKLEGEPYDYNAILPYLKELEEQLQAKTDERTQDQDTKPKTENLWDDWPKVEPQISHGADQRGAAEVKLTEDSKDFVLNRSVNTDGKREEFCFEVAVKKEVEDNGADNGDEAAEDDLKEDSMKEESLSDEDYFPSNTWASTPKVEEADDPPAASRARRQKADGPIKCKVCDKNISSLSYLRIHMRTHTGEKPFKCYICNRGFITSSKMHRHVLTHTETWDDAANIKAEIKSETDSDTPLKKMKRSKEIVEENRNEILAMVLQNARRIPKHPDAAGSLTDKVLSDEQSRMCNICGQVFQHFYYLEEHLKSHGSKIALEDEEKAEEKKHVCQVCNKGFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRLDKQFGVGSMTATGLGQAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -