Btha017329.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000040.1:1762324-1765629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.007 0.45 11.3 0.2 1 23 77 100 77 100 0.95 2 22 0.00011 0.0073 16.9 1.5 1 23 171 193 171 193 0.98 3 22 0.00016 0.01 16.5 0.2 1 23 197 219 197 219 0.97 4 22 0.0029 0.19 12.4 0.1 1 21 253 273 253 276 0.90 5 22 0.042 2.7 8.8 0.7 1 23 283 306 283 306 0.93 6 22 1.1 74 4.3 0.3 1 14 313 326 313 327 0.87 7 22 0.14 8.8 7.2 0.5 1 23 375 397 375 397 0.97 8 22 0.55 35 5.3 0.5 2 23 423 445 422 445 0.89 9 22 0.0012 0.079 13.6 1.6 1 23 467 489 467 489 0.98 10 22 0.053 3.4 8.5 6.3 2 21 494 513 493 515 0.92 11 22 0.00018 0.011 16.3 0.2 1 23 520 543 520 543 0.95 12 22 0.00062 0.04 14.6 1.1 1 23 549 572 549 572 0.96 13 22 0.13 8.5 7.2 0.1 1 23 621 643 621 643 0.90 14 22 1.1 71 4.3 0.8 2 23 667 689 666 689 0.93 15 22 0.0011 0.072 13.8 1.4 1 23 711 733 711 733 0.98 16 22 0.012 0.76 10.5 2.9 3 23 739 759 738 759 0.97 17 22 0.022 1.4 9.7 1.3 1 23 766 789 766 789 0.95 18 22 0.14 9 7.2 0.7 1 23 795 818 795 818 0.94 19 22 0.16 10 7.0 2.3 1 23 824 847 824 847 0.95 20 22 0.011 0.68 10.7 0.7 1 23 853 875 853 875 0.98 21 22 1.6e-05 0.001 19.6 2.7 1 23 881 903 881 903 0.99 22 22 0.015 0.99 10.2 7.4 1 23 909 931 909 932 0.96
Sequence Information
- Coding Sequence
- ATGTTTGTTCAGGGTTCCGCTAATGCGGAAGCGGTGCGGAACGTAGTTAAGCGAGTTAGGAAGTTAAAAGAGAACGTAAGTGCGCGCCAGATGCGCAGACGCCGGCGCGCTAACAACGAGTTGCCCGAAGAGTCGGAGAGGCGAATCTCGAAAACAATGATGAGGAGGAACGCCATGACACTAATAGAATGCTCGACGGCGTGGGCGTTCCGATGGTTTCACAGCGCGTTCTTCTGCTCCTATTGCGATGAGAAATTCATCGACACGGCACCCTTGCGCGGTCATGTGATCACTTCACATCTCACCGGCTCACCCACTCAGCGTATATTTTCGAAGTTGACGGAAAACAACATGGTTAAAATCGACATAACAGATCTAAGTTGTAGGTTGtgcaaatgtaaatgtaacTCCGTAGACATACTGAAACATCATTTAACAACCGTTCACAGAAAGACGTTCAACAGGGAATACAGCGACGGGGTTCTGCCGTTCAAACTCGATCAGAACGGGTTTTATTGTCAGATCTGCTTCGAGTTTTTCGTCAGCTTCTCCAAATTGAACGCGCACATGAACTCGCACTATCAGAACTATATATGCGACGCTTGCGGGAAGGCTTTCGTTTCGAAGTCCAGGTTCAGGGCGCACGCGCAGTCGCACGAGATCGGAAACTTCCCGTGCGGCCAGTGCGGCGAGGTGTCACAGACACGTGCGGCACGCATGTGCCACAGGCTCAAGGTGCACAGGAAGGGCGTGCGGTACACGTGCCCGCGTTGCCCGGAAGTGTTCACCACGTATTACGCGAGAGCGAAACATTTAGTGGACGGGCACGAGCAGCGGCGGAGGTATTACGAATGCACCGCATGCGGCGAATCCTTCGAAACGAGCTGCAAAAGGGCGGCACACTTCCGTGCGGCACACGGGCCCGTCGAGAAACGCCACGAGTGTCCGTACTGCTCACGGTACTACGTCAgaCCGGAAGAGACCGATGCATCTCAAGCGTCAGTTAATGAtaacatgaaaataaagtgGAAAAAGAAAAGGAGGGTCGCGGAGGACAATGCTAACGCAGCTGTAATATTGGAACATTCGAACGCCGTTGCGTTTAGATGGCAACGTGGCAGGTTCATGTGTGCTTACTGTTCACGTATATGCCCTGACATAAGCGAGATACGCCTGCACTCCCGCGTGCACACCGACAAGCTTGATGTGTTTAAAAATTCTGAAGTGCGCAATTCCTACCCTTTGAGGGTTGACATCACAGATCTCACTTGCGTCGTTTGCGAACAGAGAATAAAAACTTTGAATGAGTTTAAGCGGCATGTAACAGACAGACACGGTAAAGTTTTCAATCCCAATTACAGTGACGGCCTAGTGCCCTTCGTGTTAACGGGCGGTGAATATAAATGCGTCCATTGCGGTGTTTCATTTGAGAGTTTCATGCGCTTATTTGTGCATATGAACGAACATTACCAGAGCTGCGTATGTTACACCTGTGGAAAGGGCTTCTCCGGCAGGCATAAGCTGCGCGCTCATCTAAAGTGCCACGAATCCGGCGAGTTCGTATGTCCGAAGTGCGACGAGGTGTTCACGAACAGAGCGACGAGAAGCAGGCACGTGTCCGTCGCTCACGGGCCCAAGGAACGTTATCGGTGTCCGGTCTGCGGTGAACGTTTCGATTCTTACCATTCGCGGCTGAGACATCTCGACCGAGCGCACGGTCGCAGGAGCGAGTACCGCTGCAgGCCCCGGGAAAACAGTGTCAGATGGAAACCGAGGCGCAAGTTTAATGACCACAGAGATAACGCTGCTATCATTATTGAGTGTTCCAACGCGTGTCCATTCAGATGGAAACGCGGGGCGTTCGTCTGCGCGTACTGTCCAACATCGTTCGGAGACTTTACAGGTGTCCGAGAGCACACCGTAGAGCACCCGAATAGGGTTGAAGCAGTACGATTAGCCCGTCCGTTCGACACAATTAAAGCTGACGTAACAAATCTGCGATGCGAGCTATGTTTTCAAAATGCGCGAGATCTGGACCAACTCTCCGATCACTTAATCAATTGTCACGAGAAGCCGTTAGTTAAATATCACGGCGTCGGCATCACACCCTTCTATTTGAAAGGCAAGGAGTTCGTCTGTTCGCAATGCAGCGAGCGCTTCGACTTATTCACAAATCTAAACACTCATATGAACcagcattacaaaaataatatttgcttcAAATGTGGCAAAGCTTTCTCGGCTTTCCACAGATTACACGCGCACATGGTGACACACGAGCTGGCTAACGACTGTTACAGGTGCACGAAATGTGGCGATGTATTTCCCACACGCAAACTCAAAAGCAGTCACATGTCTTACCTGCATGGACCAAAGTTAAGATACAGGTGTCCCTACTGCAAGGACAAATTCAAGGCCTAcggtgatagagccaagcatcTCAAGGAAGTGCACGACAGAAAAGTGGACTATACCTGCCACTTGTGTCCGGCTGTGTTTGCTCTGTGCAACCAGAGAACTAAGCACGTACAGCAGGTCCACATTAAGCACAAGCCGTTCCAATGCGACTACTGCGCGTTCAGATCGTCGACGGCCGCTCGGTTGAGGAGTCACATGGTGAAGCACGACGGCGTGAGGAAGTATCAGTGCGACGTTTGTAAGAAAGCCTATTGTAGGATAAAAACATTACGCGAACACATGCGAATTCACAACAACGACAGGCGGTTCGTCTGCGAGTACTGCAACAGCGCGTTCGTGCAGAAATGCAGCTTGCAGTGTCACATGAGGACGCATCATCCCATCGCCCCCTTAGCGGACAAGAGCAAACACCCAGAGTTGCcagtttataaataa
- Protein Sequence
- MFVQGSANAEAVRNVVKRVRKLKENVSARQMRRRRRANNELPEESERRISKTMMRRNAMTLIECSTAWAFRWFHSAFFCSYCDEKFIDTAPLRGHVITSHLTGSPTQRIFSKLTENNMVKIDITDLSCRLCKCKCNSVDILKHHLTTVHRKTFNREYSDGVLPFKLDQNGFYCQICFEFFVSFSKLNAHMNSHYQNYICDACGKAFVSKSRFRAHAQSHEIGNFPCGQCGEVSQTRAARMCHRLKVHRKGVRYTCPRCPEVFTTYYARAKHLVDGHEQRRRYYECTACGESFETSCKRAAHFRAAHGPVEKRHECPYCSRYYVRPEETDASQASVNDNMKIKWKKKRRVAEDNANAAVILEHSNAVAFRWQRGRFMCAYCSRICPDISEIRLHSRVHTDKLDVFKNSEVRNSYPLRVDITDLTCVVCEQRIKTLNEFKRHVTDRHGKVFNPNYSDGLVPFVLTGGEYKCVHCGVSFESFMRLFVHMNEHYQSCVCYTCGKGFSGRHKLRAHLKCHESGEFVCPKCDEVFTNRATRSRHVSVAHGPKERYRCPVCGERFDSYHSRLRHLDRAHGRRSEYRCRPRENSVRWKPRRKFNDHRDNAAIIIECSNACPFRWKRGAFVCAYCPTSFGDFTGVREHTVEHPNRVEAVRLARPFDTIKADVTNLRCELCFQNARDLDQLSDHLINCHEKPLVKYHGVGITPFYLKGKEFVCSQCSERFDLFTNLNTHMNQHYKNNICFKCGKAFSAFHRLHAHMVTHELANDCYRCTKCGDVFPTRKLKSSHMSYLHGPKLRYRCPYCKDKFKAYGDRAKHLKEVHDRKVDYTCHLCPAVFALCNQRTKHVQQVHIKHKPFQCDYCAFRSSTAARLRSHMVKHDGVRKYQCDVCKKAYCRIKTLREHMRIHNNDRRFVCEYCNSAFVQKCSLQCHMRTHHPIAPLADKSKHPELPVYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -