Btha015051.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- ZFX
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000028.1:9414508-9419476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2 1.4e+02 3.4 2.0 1 23 249 271 249 271 0.92 2 14 0.63 41 5.1 0.1 6 23 283 301 283 301 0.95 3 14 1.3e-07 8.6e-06 26.1 0.7 2 23 360 381 360 381 0.97 4 14 0.01 0.65 10.8 5.0 1 23 387 410 387 410 0.96 5 14 0.00085 0.055 14.1 0.6 1 23 416 438 416 438 0.98 6 14 0.00035 0.022 15.4 2.4 1 23 444 466 444 466 0.98 7 14 0.0019 0.13 13.0 2.9 1 22 472 493 472 493 0.94 8 14 0.011 0.68 10.7 2.0 1 23 649 671 649 671 0.96 9 14 0.0002 0.013 16.1 2.0 2 23 678 700 677 700 0.92 10 14 5.5e-07 3.5e-05 24.2 1.1 1 23 706 728 706 728 0.99 11 14 2e-06 0.00013 22.4 2.9 1 23 734 756 734 756 0.98 12 14 0.0014 0.088 13.5 0.6 1 23 762 784 762 784 0.98 13 14 0.00028 0.018 15.7 4.6 1 23 790 812 790 812 0.96 14 14 9.6e-05 0.0062 17.1 3.2 1 23 818 841 818 841 0.97
Sequence Information
- Coding Sequence
- ATGAACAACAGCACTGaacaaatattcattttaaattcttcAGAAAATCAGTCTGTAATTGGAACACAAAAAGTTACGGAATTAACCGCTACAAACGAAGTAAACCTCGAGAATGTCGAAGACTTCTCAAATGTGTGTCGCACCTGTGCAACTATTACAGAGTTTGTTATACCAATCTTTATGGGAGAAGGCTTACAGAATAACCTAGctgataaaatacataaacatttaccAATACAGgtatCAGAGCAGGATCTTCTGCCTCAAGTAGTATGCTACCAGTGTGCCAGTACCCTATTGGCATGGCACGAACTTGTAAAATGCTGTGTGCAAGCAGACACAGCACTCAAGACTCGCCTAGCTGCAATACTTGCTaAGCAAAAGAACACAAACCATGATGCAGGAGACAGCTTGGATAAGGAACCAAAAACAAAGTCAAGACACTCaatacatataacaaatattagaaatatattaaccAGACATTTCCAGTTATCGGACGAGGATTTTAATGATTCAGGATTAGAGTTCATTTGTGAAAAATGTAACAATCAATCTAATTTACCAACACTGCAGAGCTTTGTTGAACATCTACAGTCACAGCACAATTCCGAATTCAAACGCAAGCAGTCGATAGAAcgttttataaaagaatatgtaTCTGTTGTGGAGATGTTAGTCACTGAAGACCAAATAATTGATGAAGAGCCCGTGAAAGAAATTACTGAAGTAAATATACCAAGATTCTATTGTCCATACTGTGCAAGCGCATTTTCTTCCACTACGCGTCTCATTTGCCATTTGAATCAACATGTTGATGTCTGTATACAGAATGGAGTAGCATGCTGTGATAAAGTTTATAACGATACTAAATCCTTCGTGATACATCTACAAGAACGACATATAAGCCGAACATCAAACAACACAAACATTTGCCAAAGCTGTGGCTTTATCGCTGAAGGCATCGACGAACTTCAGGCCCACATAGCTGATAAACATGACGTTATAAAATCTGACGCACATGACCGCAAAGACAGGATGGGCGACCATGACAAGTGCCAGAAATATATACCAGCCGTCTGTCCCGAATGCAACAAAACCTTTTCGAACAAATACAATATGCTTGTACACATGAGAAGCCACAAGAGAATAGAAACACATCCGTGCAACCAATGCAACAAAAGATACAAGAGTCGAGCTAGCCTGAAATGTCACCAGAAAATAGCCCACGAGGGCGTTCTAAGCTTTCATTGCTCGTATTGCGGCGAGGCGTTTCCATCGAGGATTGCGCGCAACGTTCACACGCGCATACATTCCGGAGACAGGCCGTACTCGTGCAAGTTTTGCACCAAATCCTTCCGTGCGAAGAACACTCTCGACCGCCACTTAGAAATGCACCTTGATATACGGAAATACGAATGCTACATTTGCACAAAGAGGTTCAGGAAGAAAACACACCTTGACTACCATTTAAGCACATGGACGCCCAGCTGCGTCGGCTCAGATCCGTATGACGCGGTGGTTGAGAACAATACGGTCTCGCAGGATTATGCCGTCAAAGACGAAAATGTCGATTCCGTTTCCACGGGAGACGGATGCTTTGAAATAGATGAAGTTACAGAAGATGATGATGACCAGCCACTAGCGACCATAGCGACAAAAAAATCAACAGATCTGTACAACAATTTCTATAACGCCCTCGTTAACTTTAGAAATCATTTTGTAACGGAACACAAAGGGAAAAAGTGCGAATATCCAGATTTTACAGATTCAAGTGATTCCGAAGAGATCGTTGAAGTGGGTGATGATCGAAGCGATGTTGGTGATGAGAACGTGAACAAATTCGATGATCTAACTCAATGCAATATGCGTAAAGACCGAATGGACGAAGAAACCAGATTAGAAATAAACACAGCGCAGACAAGAATCAATGGGAAGATCTTCTTTGAGTGCAAAATATGTGGAAAGAATTTAAGCTCCCCGCATACGTACATCTTTCACAAACGAATCCACACCGGCGAGAGGCCATGCGTGTGTCATATATGCGGGAAGCAGTTTCGCGCGCCGAACGGCTTACAGAGACACTTGACGGAAACGCACGAACGTGCTCGTCGCTATACGTGCACTTTGTGTCCCAAGAACTTTGCAAACACGCAGAACTTGAAGCAGCACATGCGCATACATACCGGCGAGCGGCCATTCGTCTGTACCCAATGCGATAAAAGATTTACGCAGAGCGGTTCTTTGCATGTACATTTGAAGACTCACAGCGACCAATTCCCCTTCCAGTGCGCGGAGTGTGGAGCCAAGTTCCGTCTGCGATTGGGCCTAACGAGGCACAAGTTAAAGCATACCGGTGAACGTCCGCACGTCTGTGTGCATTGCGGCAAAGGTTTCCGCCAAAAGCACGACCTTTACAGCCACGCGTTGTCCCACACCGATCCGAAACCGCACACATGTGATATCTGTAACGCCGCCTTTAGACAACAGAGGGCGCTGAAACATCATCGCAACAGAGTACACGCGAACGAATCTTCTAGGGAAGTGGCGAATCATTTAGTTTTCAATCATATCGGACAGTACCAGTGA
- Protein Sequence
- MNNSTEQIFILNSSENQSVIGTQKVTELTATNEVNLENVEDFSNVCRTCATITEFVIPIFMGEGLQNNLADKIHKHLPIQVSEQDLLPQVVCYQCASTLLAWHELVKCCVQADTALKTRLAAILAKQKNTNHDAGDSLDKEPKTKSRHSIHITNIRNILTRHFQLSDEDFNDSGLEFICEKCNNQSNLPTLQSFVEHLQSQHNSEFKRKQSIERFIKEYVSVVEMLVTEDQIIDEEPVKEITEVNIPRFYCPYCASAFSSTTRLICHLNQHVDVCIQNGVACCDKVYNDTKSFVIHLQERHISRTSNNTNICQSCGFIAEGIDELQAHIADKHDVIKSDAHDRKDRMGDHDKCQKYIPAVCPECNKTFSNKYNMLVHMRSHKRIETHPCNQCNKRYKSRASLKCHQKIAHEGVLSFHCSYCGEAFPSRIARNVHTRIHSGDRPYSCKFCTKSFRAKNTLDRHLEMHLDIRKYECYICTKRFRKKTHLDYHLSTWTPSCVGSDPYDAVVENNTVSQDYAVKDENVDSVSTGDGCFEIDEVTEDDDDQPLATIATKKSTDLYNNFYNALVNFRNHFVTEHKGKKCEYPDFTDSSDSEEIVEVGDDRSDVGDENVNKFDDLTQCNMRKDRMDEETRLEINTAQTRINGKIFFECKICGKNLSSPHTYIFHKRIHTGERPCVCHICGKQFRAPNGLQRHLTETHERARRYTCTLCPKNFANTQNLKQHMRIHTGERPFVCTQCDKRFTQSGSLHVHLKTHSDQFPFQCAECGAKFRLRLGLTRHKLKHTGERPHVCVHCGKGFRQKHDLYSHALSHTDPKPHTCDICNAAFRQQRALKHHRNRVHANESSREVANHLVFNHIGQYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -