Btha013347.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000025.1:360701-368587[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.8e-05 0.0038 17.8 0.3 1 23 122 145 122 145 0.98 2 12 0.0028 0.18 12.5 2.7 2 23 282 303 282 303 0.97 3 12 0.0017 0.11 13.2 5.5 1 23 314 336 314 336 0.98 4 12 0.00073 0.047 14.3 4.0 1 23 344 367 344 367 0.97 5 12 0.00036 0.023 15.3 0.2 1 23 373 395 373 395 0.95 6 12 2.6e-05 0.0017 18.9 6.7 1 23 401 423 401 423 0.98 7 12 1.1e-06 6.9e-05 23.3 0.7 2 23 430 451 429 451 0.95 8 12 1.2e-05 0.00075 20.0 0.6 1 23 457 479 457 479 0.98 9 12 6.4e-07 4.1e-05 24.0 0.3 1 23 485 507 485 507 0.98 10 12 0.00011 0.0074 16.9 0.3 1 23 513 535 513 535 0.98 11 12 0.00011 0.0072 16.9 3.4 1 21 541 561 541 563 0.96 12 12 3.1e-06 0.0002 21.8 0.3 1 23 569 591 569 591 0.98
Sequence Information
- Coding Sequence
- atggATATTACGGTTAACGATGATAAAGTGGATATCATGTGTAGAGTATGCCTCTGTGAAGGGAAAAACATGCGGCTGCTATCGAGTAAAATGGAAAGTGATGATAGGACGATAGCAGagattctttcttttattttaaatctttgcaTTTCTGTGAGTAATACATATTCCGAACAAGTTTGTGAGGACTGCCATGCGATAATTCATAAGTTTGATCAATTTAAAAAGCGTTGTATTCAGTCGGAGGGCTTATTAAATGATGCTTATTACGATGacagtaaagaaaaaatatgtggGGGTCTTAATATTCCGAAATCACCTATTAGAgaaaaatcaatcaataaattttgtatGGATGAACCATATCAGTGTAGtgtttgtacaaaaaaattctCGGATTTACTTCTTCTCGAATCTCATGTATTAACTGGCCATAGCTACACAATGATTAAAGATATTACTATATCGGATAATATTTTAGACTATTCAGATTATCCAGAAAACACATCCCTTTATAATAACAGTTCTATagaaaatgataatgaaatcaATGAATTTAAAGATACAAAGGATGAATTAGAAAATGAACAGGACTTTGTCGACTTTACAGAAACCACTGAAGGGTTACAAAGTCCTTTGGAAGATACTAAAGATAAAGAAGAGGTTGTAACTAAAAActcttctttaaataaaaccaagTGTAAATGTGGATCTATTTTTGACAACTATGCCATGTATAAGATACATTTAGAGGATAATAATTGcagtgaaaatttaataaatgacatAGATAAAACATGTGATATAGAAACTGTTAAAAACAATGAAGAAAGAAGTAAAGCAGTGTGccaaaaatgtaatattgaatttaGTACAATGAGAAAGTACAAAATGCATCAACGTAAACATAGATTTGAAAACTTTGATCCCTCGGAAATCTTTCATTGTTCAATGTGTATGCGGAGATTTACAAGGAAGTCATCATACAGTGCACATCTGAAGACACACGAGATCAAAGcaaaaataaagtatgtttGCAATACATGCAAGAGAGAATTTCAACACCAAAAACATTTAGATAACCATATTTTATCTGTGCATACAAAAGAAACTGGCTACAATTGTGAATATTGCGCAAAGGCCTTTCCCACAGAACAAAGCTTAAATAACCACAGAGACGCACATAAACTAGACAAAATGCATCAATGCCATATCTGTAATAAAGGATTTTGCATGCTGTCAACATTGAGGGATCATATTCGGACCCACACTGGAGAGAAACCATTTTTGTGCTCAGCATGTGGTAAAGGATTTAGTCAAAAGAATAACTTGGCCCAGCATATGAGGCGACATCAAGGTTTGAAACCTTTCAAGTGTGAAAATTGTGAtcaaagATTCGTTTCAAAAGGTGAACTAGTCGCTCACAACCGAAAACACAGCGGCGCACATCCATTCGTTTGCGATGATTGCGGCAACGGGTTCACGACATCGAGCTCCCTGGTCAAGCATCGTCGCATCCACACCGGAGAGCGGCCTTACGCCTGCGACCTTTGCCCCATGAAGTTCAGGGCTTCTGGAACGTTGAAGAATCATCGACGCATACACACCGGCGAGAAGCCCTACCAATGTTCGCATTGTGAGAAGGCATTCGTTCAACGACAAGACCTTGTATCTCACATTCGCTGCCACACCGGTGAGCGACCATACGTCTGCACCACCTGTGGTCAGTCGTTTAGAAAGACCGCGGCTTTGAAAGCGCATCTTAAAATACATGGAAAAGAACCAATACCGATGCAAAAGGATATTAGTCTTACTGTTTTACATGGTGTCAATGTGCTAATTACTGGAGTGCACGATTTAATTAGCGGATAA
- Protein Sequence
- MDITVNDDKVDIMCRVCLCEGKNMRLLSSKMESDDRTIAEILSFILNLCISVSNTYSEQVCEDCHAIIHKFDQFKKRCIQSEGLLNDAYYDDSKEKICGGLNIPKSPIREKSINKFCMDEPYQCSVCTKKFSDLLLLESHVLTGHSYTMIKDITISDNILDYSDYPENTSLYNNSSIENDNEINEFKDTKDELENEQDFVDFTETTEGLQSPLEDTKDKEEVVTKNSSLNKTKCKCGSIFDNYAMYKIHLEDNNCSENLINDIDKTCDIETVKNNEERSKAVCQKCNIEFSTMRKYKMHQRKHRFENFDPSEIFHCSMCMRRFTRKSSYSAHLKTHEIKAKIKYVCNTCKREFQHQKHLDNHILSVHTKETGYNCEYCAKAFPTEQSLNNHRDAHKLDKMHQCHICNKGFCMLSTLRDHIRTHTGEKPFLCSACGKGFSQKNNLAQHMRRHQGLKPFKCENCDQRFVSKGELVAHNRKHSGAHPFVCDDCGNGFTTSSSLVKHRRIHTGERPYACDLCPMKFRASGTLKNHRRIHTGEKPYQCSHCEKAFVQRQDLVSHIRCHTGERPYVCTTCGQSFRKTAALKAHLKIHGKEPIPMQKDISLTVLHGVNVLITGVHDLISG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -