Btha016840.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000038.1:617043-619421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.8e-07 5.7e-05 23.5 2.2 1 23 8 31 8 31 0.95 2 20 0.0023 0.15 12.8 0.4 2 23 37 59 36 59 0.94 3 20 1.7e-05 0.0011 19.5 0.3 2 23 68 90 68 90 0.97 4 20 1.4e-06 8.8e-05 22.9 1.9 2 23 99 121 98 121 0.95 5 20 3.5e-05 0.0022 18.5 3.2 2 23 129 151 129 151 0.97 6 20 1.3e-06 8.6e-05 23.0 2.4 2 23 160 182 159 182 0.96 7 20 1.7e-06 0.00011 22.6 2.0 1 23 188 211 188 211 0.98 8 20 0.00097 0.062 14.0 0.3 3 23 266 287 264 287 0.95 9 20 0.00073 0.047 14.3 1.3 1 23 317 340 317 340 0.97 10 20 0.12 7.5 7.4 0.6 2 21 348 367 347 368 0.93 11 20 0.049 3.2 8.6 2.5 3 23 378 399 377 399 0.95 12 20 0.00067 0.043 14.5 6.0 1 23 424 447 424 447 0.96 13 20 0.00024 0.016 15.9 1.3 2 23 454 476 453 476 0.96 14 20 2.7e-05 0.0017 18.8 1.9 2 23 483 505 482 505 0.93 15 20 0.00043 0.028 15.1 1.5 1 23 511 534 511 534 0.98 16 20 0.48 31 5.5 8.1 2 23 542 564 542 564 0.95 17 20 0.0019 0.13 13.0 0.2 1 23 571 594 571 594 0.97 18 20 0.0017 0.11 13.2 1.8 1 23 601 624 601 624 0.96 19 20 0.00076 0.049 14.3 3.0 3 23 639 660 638 660 0.93 20 20 0.93 60 4.6 1.4 3 17 682 696 681 697 0.88
Sequence Information
- Coding Sequence
- ATGTTTCACAACCATGCAGACTTCGTGTGCGACTACTGCAGTCGCACCTTCACCCGCAAGTACAACTTGCAGACGCACATTGAAAACTATCACATGAACTCCTCGTGCTACTGCCAGATATGCGACCAGAGATTCGGCACACCGGCGGGTCTCCTGTTACATCTCACGAGAGGCCACAACAGATACGGTCAGGCGTTCCCGGAGTGCGATCTGTGCGGGCGCATATTCACCAGGAAACAGAACATCACGTCGCACATGATCACCGTGCACCTGCAAGGCGTACGCCCCGATATAAGATGTCGTTTATGCGACAAAACTTTCACAACAGAGAGGAATCTAAAGAGGCATATGAATCAGCTGCATAATCCACACGTAGAGTACCCAACTTGTCACGATTGTAATAAAGTATTCAAAGCTAAACACTCTCTAATAGCTCATATCCAATCTACTCACAATGTCACGGAGAAAGGATTGATCAAATGCCATCTGTGCGATAAAGTGTACACTAACAACAGAAATTTGAAAAGGCACATCGAAATGTTTCACGGTGAGAGAGGCCAGTTCAGATGTGACGTGTGTCCCAAAGTTTACACATCCAATCAGAGCCTGAGGAGGCATAGGAAGACTAGACATGATCCTGAAAATCAGACACGTTACCAATGCGAGTTCTGCTACGAAAACATTCTCGGAAAAGACAACTTTGACAATCACATTGCCTTCTATCACAGACAAGACAATTGCAGCTCGAACGACTACGACGCTTTTGATTATCGACCGAAATGTAAAGAATTGGCATGCAATAATTGCAAAAAGACATTCGGGGAGGAACCTCTCCTGCGACGCCATGTTAAAATGGAACACTCTTTCcaagatttttataattattgcaaaaGATCGCTGCTGAAATTGTCGCATGGTAGTGTTATAGAAAGTCACAGAAAAATTTGTTTCAGTTGTGAATTCTGCAGAAACGCTTTTAGCACtgtatatgatttaaaatacCATATGAAAGTGAATCACGATATTGACTACCGTCTGTCAACTTGCAATGTATGCTTTAACAGATTCTATAGTAAAGAAACTTTGCTGGAGCACAAGAAAATCTGTCTTCCACCCGGAGACGTGAATTCCTGCAGACATTGCGATAAACTCTTCACGGATATCTCCAGTTTGGAATTTCACACGAGAATATTCCACCCTCAAGCTCAAATCGCGGACTCTATAATCTCCTCCACCCACATTGACGATACCACAACCGATCTCGGTTCCTACAAATGTACCCATTGTGACCGTGTATACTACAGCGAGAGATCTTTAAAACACCACGTTAAACTAAAGCATACGTCAGACGAGGCCATGGAATGTGAGTTTTGTCGAAAAGTTTGCAGCAATAAATACTACCTCGCCTCCCACATCAAAATTGTTCACAGCAACGACCCTTGGTCCAAATGCCCCTACTGCGACAAGCAGTTCAAATCGAAAAGGAATATCAGACGCCACGTCGAATACACCCATTTAGGTATGCAGAGATACAAGTGCGTTGAATGCGAGACGCTATTCAAAGAGAAACGCAGCCTCAGGAAACACGTCCGTATCAAACACCCGAATTCGGCTTCGTTCCCACAATGTCACGTATGCCACAAGCGGTTCGAATCGGCGAAGTCTTGCAAGACCCATCTGAAGCTAATGCACTCGTTCGACACGGACACCCACCCGTGCGATCTCTGCTCCGTCTCCTTCGCATCGATCGAAGCCCTGAATATACATTTGCAGACGAAACATTTAGCCGAAGATGCGATATATAAATGCGAGGAGTGTAATTTGGTTTTCAACGGACAAGAGAAATTCGAGCACCACAATAACATGTCCCACGTCAATTTAATACCGGGCACGAAGCGGAAAGCCTTACCGCGTTGCATAATATGCACGAAGGACTTCAGCACGAGGAAGACTTTAAAGCGTCACATAAAGAAGTTCCATCAGGAGTTTGACGTTGACGAGTTAGTCACTTTCGGTTGGCGGCTGAGAGTGACCGGCGTAGATTGCGAGGATTGCGTCAAATGCTTCAATGACGAATTCAACTACAACGTCTATCAGGAGTTGAAACACCTGAGTGGATCCATCATATTTCAATGTCAGACCTGTTTCTCTTCGTACAACGCCTTGGAGTATTCGATAATGAGATACAAGCTCGTCAACAGGGATGCGTCTAAAAGCAAAATGATATTGAGTGAGCTATGCACCGCGGAAATGAGCGACTGCGAAACGAATGTTGGACAAAATTCGACAGAGATTATGGAGCCCGAGAGCACAACTGACGAAGTTAAGCTGGAGCCACCCGATATATACGAAGTTAAGACTGAACCAATGTCACCATAA
- Protein Sequence
- MFHNHADFVCDYCSRTFTRKYNLQTHIENYHMNSSCYCQICDQRFGTPAGLLLHLTRGHNRYGQAFPECDLCGRIFTRKQNITSHMITVHLQGVRPDIRCRLCDKTFTTERNLKRHMNQLHNPHVEYPTCHDCNKVFKAKHSLIAHIQSTHNVTEKGLIKCHLCDKVYTNNRNLKRHIEMFHGERGQFRCDVCPKVYTSNQSLRRHRKTRHDPENQTRYQCEFCYENILGKDNFDNHIAFYHRQDNCSSNDYDAFDYRPKCKELACNNCKKTFGEEPLLRRHVKMEHSFQDFYNYCKRSLLKLSHGSVIESHRKICFSCEFCRNAFSTVYDLKYHMKVNHDIDYRLSTCNVCFNRFYSKETLLEHKKICLPPGDVNSCRHCDKLFTDISSLEFHTRIFHPQAQIADSIISSTHIDDTTTDLGSYKCTHCDRVYYSERSLKHHVKLKHTSDEAMECEFCRKVCSNKYYLASHIKIVHSNDPWSKCPYCDKQFKSKRNIRRHVEYTHLGMQRYKCVECETLFKEKRSLRKHVRIKHPNSASFPQCHVCHKRFESAKSCKTHLKLMHSFDTDTHPCDLCSVSFASIEALNIHLQTKHLAEDAIYKCEECNLVFNGQEKFEHHNNMSHVNLIPGTKRKALPRCIICTKDFSTRKTLKRHIKKFHQEFDVDELVTFGWRLRVTGVDCEDCVKCFNDEFNYNVYQELKHLSGSIIFQCQTCFSSYNALEYSIMRYKLVNRDASKSKMILSELCTAEMSDCETNVGQNSTEIMEPESTTDEVKLEPPDIYEVKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -