Btha017285.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000040.1:1440171-1446351[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 49 0.2 13 6.7 0.1 1 23 50 72 50 72 0.96 2 49 0.93 60 4.6 0.0 2 23 100 122 99 122 0.95 3 49 0.81 52 4.8 2.3 2 23 143 165 142 165 0.94 4 49 0.00027 0.017 15.7 1.3 1 23 170 192 170 193 0.95 5 49 0.0012 0.08 13.6 0.8 1 23 197 220 197 220 0.95 6 49 0.018 1.1 10.0 0.9 3 23 224 245 223 245 0.97 7 49 1 65 4.5 0.1 2 20 251 269 250 271 0.92 8 49 0.055 3.6 8.4 2.4 1 20 322 341 322 345 0.87 9 49 0.059 3.8 8.3 0.1 1 23 417 440 417 440 0.90 10 49 0.00011 0.007 17.0 3.1 2 23 446 468 446 468 0.95 11 49 1.4 91 4.0 2.7 1 23 473 496 473 496 0.93 12 49 6e-05 0.0039 17.8 0.4 2 23 502 524 501 524 0.92 13 49 0.0002 0.013 16.1 3.3 1 23 528 551 528 551 0.97 14 49 0.046 3 8.7 0.6 2 23 558 579 557 579 0.96 15 49 2.1 1.4e+02 3.5 1.1 1 10 585 594 585 598 0.95 16 49 0.0062 0.4 11.4 4.6 3 23 641 661 639 661 0.96 17 49 0.0069 0.45 11.3 0.1 2 23 689 711 688 711 0.92 18 49 0.021 1.4 9.7 1.0 1 23 731 754 731 754 0.96 19 49 0.00023 0.015 15.9 1.3 1 23 759 782 759 782 0.96 20 49 0.00078 0.05 14.2 3.2 1 23 787 810 787 810 0.95 21 49 0.013 0.85 10.4 2.2 2 21 813 832 813 835 0.95 22 49 0.048 3.1 8.6 3.3 2 21 842 861 841 862 0.94 23 49 0.07 4.5 8.1 2.9 1 23 918 941 918 941 0.90 24 49 1.3 86 4.1 0.1 2 23 1014 1037 1013 1037 0.94 25 49 0.00011 0.0069 17.0 0.3 3 23 1044 1065 1043 1065 0.94 26 49 0.021 1.3 9.8 4.5 2 23 1070 1092 1069 1092 0.93 27 49 0.00079 0.051 14.2 2.9 1 23 1097 1120 1097 1120 0.97 28 49 9.6e-06 0.00062 20.3 5.2 1 23 1124 1147 1124 1147 0.97 29 49 0.00018 0.012 16.3 0.2 2 23 1154 1175 1153 1175 0.96 30 49 0.026 1.7 9.4 5.5 1 23 1181 1204 1181 1204 0.94 31 49 0.00079 0.051 14.2 2.9 1 23 1209 1232 1209 1232 0.97 32 49 9.6e-06 0.00062 20.3 5.2 1 23 1236 1259 1236 1259 0.97 33 49 0.00018 0.012 16.3 0.2 2 23 1266 1287 1265 1287 0.96 34 49 0.026 1.7 9.4 5.5 1 23 1293 1316 1293 1316 0.94 35 49 0.00079 0.051 14.2 2.9 1 23 1321 1344 1321 1344 0.97 36 49 9.6e-06 0.00062 20.3 5.2 1 23 1348 1371 1348 1371 0.97 37 49 0.021 1.4 9.7 1.0 1 23 1380 1403 1380 1403 0.96 38 49 0.00023 0.015 15.9 1.3 1 23 1408 1431 1408 1431 0.96 39 49 0.00078 0.05 14.2 3.2 1 23 1436 1459 1436 1459 0.95 40 49 0.013 0.85 10.4 2.2 2 21 1462 1481 1462 1484 0.95 41 49 0.048 3.1 8.6 3.3 2 21 1491 1510 1490 1511 0.94 42 49 0.07 4.5 8.1 2.9 1 23 1567 1590 1567 1590 0.90 43 49 1.3 86 4.1 0.1 2 23 1633 1656 1632 1656 0.94 44 49 0.00011 0.0069 17.0 0.3 3 23 1663 1684 1662 1684 0.94 45 49 0.021 1.3 9.8 4.5 2 23 1689 1711 1688 1711 0.93 46 49 0.00079 0.051 14.2 2.9 1 23 1716 1739 1716 1739 0.97 47 49 9.6e-06 0.00062 20.3 5.2 1 23 1743 1766 1743 1766 0.97 48 49 0.00018 0.012 16.3 0.2 2 23 1773 1794 1772 1794 0.96 49 49 0.00078 0.051 14.2 2.2 1 23 1800 1822 1800 1822 0.97
Sequence Information
- Coding Sequence
- atgagCTCTAACGAACGCATGCCAAGCATCGAGGTCAgagATAAAAAGGGGCGAGCTAAGACGCCCAGTGCTAATAAACTAAGGAGGAGGAATCTTCTGATTCTATTCAACAACACAACACTGATCCCTTTTAAATGGCGTGGAAAGTACATGTGCTTCTATTGCGGGGAGGATTTGCCAGAATACAACGAACTCAGAGATCATACAAACGCGCACGGCCCCTGTACCGACACGGATCGAGCGATTCGACTCGTCAAAGCATGCGATGCTGAAGTCAAAATCGATGTATCGAACATAACGTGCCAGTTATGTGACGGGGCGTTTAGTAATTTCGACGTAATAGTCGATCATTTGCGCTCTGAACATAGGCTGGCGTATGATAAAGGCGTGCGTTTAGACATCACCAGGTATCGGCTAGCGGATCTCAAGTGCTTGTTGTGCGACCAGCAATTTAGTTTCTTCAATAAATTGGTTATTCACGTAAACAATTGCCATCCGAATAAATGTTTCGTATGCGATGAATGTGATCAGAAATTCAATAAGAGGCGGGATTTAGATGCGCATGTTAGATTGCATCATAGGAAAAGTTATGCGTGTTTAAAATGCTCCCTCACTTTTCGATCCAACGCCGAGttgcagaatcacaagatgaaCTCGCACGCATCCGCGTGTACAATCTGCTTTAAGTATTTCCCCTCAGCAAATAAAAGGCTCAAGCACATGAAGACAGATCATGTGTCCGATAGCCTCCAATGTGGATTCTGCCTTAAGGTTCTTACGACGAAGCAGGGTTTTCTGCGACACGCGGCAACTTGTGCACGTATTGAAGACGGCATCAAAATATTCAATGATCCAATAAAAGACgataaagaaaagaaacctTCAGTTAAACAGATAAGAAATGATTTAGCTTGTATCCTTAATATGTCTACAGCTATCCCCTTTAAGCATTACATGAGTAGGTTCAGGTGCTTCTATTGCCCTAAAGACTTCACGGATTGCAATGATCTGAAACCACACACTGTATTAGAGCATCCTCTATGTGATATTAAGTTAAAATCAATGAAGTTACGTAACAGGGAAGAGGGTCGTATTAAAATTGACACCTCATCTCTATCTTGCAAAGTGTGCTGTGAGCCAATGACTGATATAAATTTTCTGATAGACCATCTCACTACGGAACACAACGTTGATATAGATAAAGGCGTTGTGATACATTTGCAATCCTACAAACTTATAAAGGACAATTTCGCGTGTCCTATATGCGGGGAGGTATATAGGTACTTCACAATACTGCTAAAGCACGTGAGCATATCGCACACGGAGAACAGAAACGTGTGCGCGTACTGCGGCAAATGTTTCCGGTCCCATCCGAATCTGCGGGCTCACGTGTCGCGTCGTCACAGGGCCGCCGCACACAGATGCGTGCAGTGCGACTCGGAATTTCTCACTAACAATCATTTGCGAACGCACTTGGGCAGAGCGCACGGCGCCAAAGTGGTGGAATGTGGCGAATGCGGGGAGAGATTCACCACGCGCTACCACATGCAGAGGCATCTGATCGACGCGCATAGATCCGGTCACAAATGTTCTTACTGCGGCAAATTGTTCATTAGGAACTCCTTCATGGTGAACCATATTAGACGGACGCATTTTAAAGAGAGAAACGTCGAGTGCACCTTGTGCCGCGAGAGGTTTTTCGACGCGCAACGCCTCAGAATGCACATGGTGAAGCATTACGGTGAACGAAACTTCCACTGCGACGTTTGCGGAAAGAAATTTCTGTGGAAAAAAAACCTAAGAGatgaaataCTGCAGGGCCCGTACGAGAACTGTACCTCTGAGAGGCGGAGGAAAAACTTGCAAATTCTATTCAACAACACATCTATTTTGCCATTCAAATGGCGCGGAAGGTGCCTCTGTTTCTATTGCGGAAAGAGCTACACGGAGTACAAGGACTTTAGGAAACACACCCAATCCCACGGTCCGTGCACCACGAAAGACTATtcgttgaaattaataaaaggaaATCATATCGAAATAAAAATCGACGTCTCGGATATCACCTGTGAAATTTGCAACGAGCCTTTCACACGCTTCGATGAAATGATCGATCATTTAATCGGTAAACACAATTTGGATTACGACAAGAGTATCGATACGCCGTTACAAGAATACAGACTGGCGGATTTCCGTTGTCTTTTCTGCGATCAGCAGTTCACGTACTTCGGATATTTGGTCAATCATGTGAATAATATTCACCcgcaaaataattacatatgtaaCGAGTGCGGTGcgagatttaataaaaagcgGGATTTGGCGTTGCATCTGCGCCATAACCATCGCCAAGGGGGATACCCTTGCACGGAATGTTCGCAGTACTTCAACTCGCATAGTCTCCTGCGCAGACACCAAAACGATTTTCATTTCAGGAAATGCAAGCGTTGCGGTCTCAATTTCGCTTCCTACAGTCTCCTGCTGAAGCATATTCAGTGCGACCATCCGGACGACGGCACTGTTAAATGTCCCCATTGCTCCAAACAATGTCATTCGCCACAGGGATTAAAGCAACATATCAATAAATGCAAAGTCAATATACTAGTACAAATAGATCAGCCCGTGGATAGCAACTTCACCCGCGAGAATTTGCTTCAAccgaaaaagaaacaaaacgtCCAACAAATACGACAGAATATACAGTGTGTTCTCAACATGTCAACAGCTCTACCATTTAAGTTCTTCGCGAAATATTGCTGCTTTTACTGCTCGAAGAAGTTCGTGGAGTTTGATGAACTCAAAGAGCACACCGTATTAGAACATCCTGTATGCGATTTGAAGTCGAAAAGTATGAAGAAGTGCAAGGGCGAGAGAATAACGGTAAAAGTTGATATAACAGGCTTAAGTTGTAAAGTTTGCGGGCAGCCTATGGAAGATTTGAACATTCTAATAGATCATCTAATCGCACAGCATAGCGCTAACTACGACAAATCCGTTACGGGCTGCCTGGAGCCATACAAAGTGATCAAAGACAATATGCCGTGCCCGATCTGTCCTAATCGCGTATTTAGATATTTCGGAATCCTTCTTAGGCATATAAATTCAGagcatagtaataataatagaatttgcGACTTCTGCGGACGTAGTTTCAAGAATGTGACGAATCTGAAAGTGCACATAACTTACGCGCACACCGGCGCCTGCGAGTGCGACGTATGCGGCACTAAATACAAGAACCAGTGGTGTCTAAGCCGGCACAAAGCTAAGAGTCACAACGCGAAGGACTACAAGTGTCCGAAATGCCCGGAGCTATTCAAATCGCAGTACCACAAACAGAAGCATTTGATCAAAGTCCACGACATTGGTCACAAGTGTACTTACTGTGGGAAAATGTTCACTAGGAACAGCTTCATGAAGGACCATATTCGCAGGACGCATTTGAAAGAGAAGAACGTGGTGTGCTCGGTGTGCGGCGAAAGGTTCTTTGATAATTATCTGTTGAGGATGCATATGGTTAAGCACGAAGGCGACAGGAAGTTCTGTTGCGACGTATGCGGCACTAAATACAAGAACCAGTGGTGTCTAAGCCGGCACAAAGCTAAGAGTCACAACGCGAAGGACTACAAGTGTCCGAAATGCCCGGAGCTATTCAAATCGCAGTACCACAAACAGAAGCATTTGATCAAAGTCCACGACATTGGTCACAAGTGTACTTACTGTGGGAAAATGTTCACTAGGAACAGCTTCATGAAGGACCATATTCGCAGGACGCATTTGAAAGAGAAGAACGTGGTGTGCTCGGTGTGCGGCGAAAGGTTCTTTGATAATTATCTGTTGAGGATGCATATGGTTAAGCACGAAGGCGACAGGAAGTTCTGTTGCGACGTATGCGGCACTAAATACAAGAACCAGTGGTGTCTAAGCCGGCACAAAGCTAAGAGTCACAACGCGAAGGACTACAAGTGTCCGAAATGCCCGGAGCTATTCAAATCGCAGTACCACAAACAGAAGCATTTGATCAAAGTCCACGACATTGGTCACAAGTGTACTTACTGTGGGAAAATGTTCACTAGGAACAGCTTCATGAAGGACCATATTCGCAGGACGCATTTACAAGAATACAGACTGGCGGATTTCCGTTGTCTTTTCTGCGATCAGCAGTTCACGTACTTCGGATATTTGGTCAATCATGTGAATAATATTCACCcgcaaaataattacatatgtaaCGAGTGCGGTGcgagatttaataaaaagcgGGATTTGGCGTTGCATCTGCGCCATAACCATCGCCAAGGGGGATACCCTTGCACGGAATGTTCGCAGTACTTCAACTCGCATAGTCTCCTGCGCAGACACCAAAACGATTTTCATTTCAGGAAATGCAAGCGTTGCGGTCTCAATTTCGCTTCCTACAGTCTCCTGCTGAAGCATATTCAGTGCGACCATCCGGACGACGGCACTGTTAAATGTCCCCATTGCTCCAAACAATGTCATTCGCCACAGGGATTAAAGCAACATATCAATAAATGCAAAGTCAATATACTAGTACAAATAGATCAGCCCGTGGATAGCAACTTCACCCGCGAGAATTTGCTTCAAccgaaaaagaaacaaaacgtCCAACAAATACGACAGAATATACAGTGTGTTCTCAACATGTCAACAGCTCTACCATTTAAGTTCTTCGCGAAATATTGCTGCTTTTACTGCTCGAAGAAGTTCGTGGAGTTTGATGAACTCAAAGAGCACACCGTATTAGAACATCCTGTATGCGATTTGAAGTCGAAAAGTATGAAGAAGTGCAAGGGCGAGAGAATAACGCATAGCGCTAACTACGACAAATCCGTTACGGGCTGCCTGGAGCCATACAAAGTGATCAAAGACAATATGCCGTGCCCGATCTGTCCTAATCGCGTATTTAGATATTTCGGAATCCTTCTTAGGCATATAAATTCAGaacatagtaataataatagaatttgcGACTTCTGCGGACGTAGTTTCAAGAATGTGACGAATCTGAAAGTGCACATAACTTACGCGCACACCGGCGCCTGCGAGTGCGACGTATGCGGCACTAAATACAAGAACCAGTGGTGTCTAAGCCGGCACAAAGCTAAGAGTCACAACGCGAAGGACTACAAGTGTCCGAAATGCCCGGAGCTATTCAAATCGCAGTACCACAAACAGAAGCATTTGATCAAAGTCCACGACATTGGTCACAAGTGTACTTACTGTGGGAAAATGTTCACTAGGAACAGCTTCATGAAGGACCATATTCGCAGGACGCATTTGAAAGAGAAGAACGTGGTGTGCTCGGTGTGCGGCGAAAGGTTCTTTGATAATTATCTGTTGAGGATGCATATGGTTAAGCACGAAGGCGACAGGAAGTTCTGTTGCGACGTATGCGGCAAAGCGTTCCTAAGGAGGAGCAATCTTAGTTCGCACAAGGAAATGCATAAAAAGTACGGACATTTACAGCCGCAAATATAA
- Protein Sequence
- MSSNERMPSIEVRDKKGRAKTPSANKLRRRNLLILFNNTTLIPFKWRGKYMCFYCGEDLPEYNELRDHTNAHGPCTDTDRAIRLVKACDAEVKIDVSNITCQLCDGAFSNFDVIVDHLRSEHRLAYDKGVRLDITRYRLADLKCLLCDQQFSFFNKLVIHVNNCHPNKCFVCDECDQKFNKRRDLDAHVRLHHRKSYACLKCSLTFRSNAELQNHKMNSHASACTICFKYFPSANKRLKHMKTDHVSDSLQCGFCLKVLTTKQGFLRHAATCARIEDGIKIFNDPIKDDKEKKPSVKQIRNDLACILNMSTAIPFKHYMSRFRCFYCPKDFTDCNDLKPHTVLEHPLCDIKLKSMKLRNREEGRIKIDTSSLSCKVCCEPMTDINFLIDHLTTEHNVDIDKGVVIHLQSYKLIKDNFACPICGEVYRYFTILLKHVSISHTENRNVCAYCGKCFRSHPNLRAHVSRRHRAAAHRCVQCDSEFLTNNHLRTHLGRAHGAKVVECGECGERFTTRYHMQRHLIDAHRSGHKCSYCGKLFIRNSFMVNHIRRTHFKERNVECTLCRERFFDAQRLRMHMVKHYGERNFHCDVCGKKFLWKKNLRDEILQGPYENCTSERRRKNLQILFNNTSILPFKWRGRCLCFYCGKSYTEYKDFRKHTQSHGPCTTKDYSLKLIKGNHIEIKIDVSDITCEICNEPFTRFDEMIDHLIGKHNLDYDKSIDTPLQEYRLADFRCLFCDQQFTYFGYLVNHVNNIHPQNNYICNECGARFNKKRDLALHLRHNHRQGGYPCTECSQYFNSHSLLRRHQNDFHFRKCKRCGLNFASYSLLLKHIQCDHPDDGTVKCPHCSKQCHSPQGLKQHINKCKVNILVQIDQPVDSNFTRENLLQPKKKQNVQQIRQNIQCVLNMSTALPFKFFAKYCCFYCSKKFVEFDELKEHTVLEHPVCDLKSKSMKKCKGERITVKVDITGLSCKVCGQPMEDLNILIDHLIAQHSANYDKSVTGCLEPYKVIKDNMPCPICPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFKSQYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVVCSVCGERFFDNYLLRMHMVKHEGDRKFCCDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFKSQYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVVCSVCGERFFDNYLLRMHMVKHEGDRKFCCDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFKSQYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLQEYRLADFRCLFCDQQFTYFGYLVNHVNNIHPQNNYICNECGARFNKKRDLALHLRHNHRQGGYPCTECSQYFNSHSLLRRHQNDFHFRKCKRCGLNFASYSLLLKHIQCDHPDDGTVKCPHCSKQCHSPQGLKQHINKCKVNILVQIDQPVDSNFTRENLLQPKKKQNVQQIRQNIQCVLNMSTALPFKFFAKYCCFYCSKKFVEFDELKEHTVLEHPVCDLKSKSMKKCKGERITHSANYDKSVTGCLEPYKVIKDNMPCPICPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFKSQYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVVCSVCGERFFDNYLLRMHMVKHEGDRKFCCDVCGKAFLRRSNLSSHKEMHKKYGHLQPQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -