Bmor014916.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638311.1:127157185-127165872[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.7 5.7e+02 2.2 3.1 1 10 207 216 207 229 0.87 2 12 0.028 3.4 9.2 1.1 2 23 231 253 230 253 0.93 3 12 0.00061 0.074 14.5 2.3 3 23 279 299 277 299 0.96 4 12 0.0085 1 10.9 0.8 1 23 312 334 312 334 0.98 5 12 0.0014 0.17 13.3 0.1 2 23 365 386 364 386 0.96 6 12 0.41 50 5.6 1.3 1 23 390 415 390 415 0.94 7 12 0.39 47 5.6 2.1 1 21 421 442 421 443 0.93 8 12 0.0008 0.097 14.1 3.2 1 21 450 470 450 471 0.94 9 12 1.2e-06 0.00015 23.0 2.5 1 23 477 499 477 499 0.99 10 12 7.4e-05 0.009 17.3 0.4 1 23 505 527 505 527 0.96 11 12 0.00013 0.016 16.6 2.8 1 23 533 555 533 555 0.99 12 12 0.0019 0.23 12.9 6.2 1 23 561 584 561 584 0.97
Sequence Information
- Coding Sequence
- atgaACTATGATTTGGACTTGGACTTCGACAATACCTGCCGTGTTTGTCTGATGCATCATGAGaaacttttgaatttgtttACGACTCAAATCGTCGATGGATACATCAAAACAATGCCAGAAATTGTTTATAATTGCCTCGATATTGTTATTAAAGAGGAAGATAttctaccgaaaaaaatttgtgaatcaTGTAAAAGCACAATTATCAGTTATTTTACCTTTAAAGAGAAATGCAAACGAACGGAAAAAGTGTTGAGCGAAGCCATACTTAAAACTGTCGTCACTGAAGAAAAAGATGAAAATTCTTCTCCAAGTGTAGACTATCCAACGGCTCCCAACACTGCAAAACACCTCGAAGCAATGGATAAATCGATTGTGAAACAAGAAGGACCAATCATGCATGAAGAGTTGATAATTGATGAAAGTTTTGACGATCCGACTGATTTAAATGTCGAATCTGAAGAGGTTTTATTTATGGTCAATATAGAAAACGATCACATAACAAAAGAAGGATTCGAATCGATGGATATCGCAACAAACGATGTCGACCTTCAAGAGCAAATCTCTGAAGCAATTCTAGCAGAAAACGAGACATTGCCGGACGACTCGGAAGAATATTTCTGTACGTTTTGTGATAAAGTTTTCTTGGGCTATTCGTATCTCGATCATTGTCAAACGCAACATTCCATGTGTACGGAATGCTACGCAACATACAATACCGACAACGAGCTCTGTAAGCACATTAACGACGAGCACAAATTAAATGGAATTGTGACAAGCGAAGTAAATCAAACAAATCAAATCAATCGCAAGCACAACAATTCGTTGTTTTGTGAAATTTGCAATAAACGTTGGAGCAATCGCGAACAATTGAATCATCACATGAAATTGCATGCAGCACTGAATATAACAGCCGACGATTTCGATTGCTTTAGCTGTGAACAGTGTCGGTCAGTATTTTTACGGACTGAGGAGTTGGAAAAGCACATGAAACTTCACGAGATTAAAAGTTTAGGAGTTGTTGAAGATGCTGTCTGTACGGACTATCAATTTCTTGAAGAGGATAAGCCAGCGAATTCGAATGAACTGATTTGTGGCTATTGTAAGGTGGTTTATTCGAATATGAACGAGCTTCGCAGTCACATTATTATCCATAACGATTCGTTTAGTTGTCCGTTTGAAGCGTGTGGCTGCGAGTACGAAACATTCTCGCGATTAAGTTTGCACATAATGAAGAAACATGTTTACGGCGACGATCATTTTTGTTCGCATTGTCGACAGGAACGCTTCGAAACATTCGACGATTTGCAATCGCATATACGAGACGGATGCACTGCGAAAAAATTCGCATGTCATCATTGTGAAAAGAAATTCTTTTCGAACAAAGCTCTTCAGTTGCATTTAAAGCAAATCGATGGTAAAAAATTTGAGTGTAGCTATTGCCAAAAGACGTTTGCACAACACGGCGAACTCACTATTCACACTCGAACGCACACAGGAGAGCGACCGTTTAAATGCACGATATGTTCGAAAACATATAAGACAGCTAGCATGCGAGCTGCTCACATGGATGCTCATATTGATGGTAAAACATTTCAGTGTACCGTTTGCGATAAGATGCTGCAAAGTCGAACTAGTTACAGGAATCACATGAAACGACACACGGTGGGAAAGAGCTATCAATGCGAAGTATGTACAAAACGATTTTATACTAAGTACCACGTGCATATGCATACGATGAAAATTCATAATAAAGTCAAGGCAATGCAAGACAACTTTCAGAATAAGTTCGTATCGCCTGAACGAACACAAGTCCCCGATGAAAAATACGCTTCAGTACGTTTActgtaa
- Protein Sequence
- MNYDLDLDFDNTCRVCLMHHEKLLNLFTTQIVDGYIKTMPEIVYNCLDIVIKEEDILPKKICESCKSTIISYFTFKEKCKRTEKVLSEAILKTVVTEEKDENSSPSVDYPTAPNTAKHLEAMDKSIVKQEGPIMHEELIIDESFDDPTDLNVESEEVLFMVNIENDHITKEGFESMDIATNDVDLQEQISEAILAENETLPDDSEEYFCTFCDKVFLGYSYLDHCQTQHSMCTECYATYNTDNELCKHINDEHKLNGIVTSEVNQTNQINRKHNNSLFCEICNKRWSNREQLNHHMKLHAALNITADDFDCFSCEQCRSVFLRTEELEKHMKLHEIKSLGVVEDAVCTDYQFLEEDKPANSNELICGYCKVVYSNMNELRSHIIIHNDSFSCPFEACGCEYETFSRLSLHIMKKHVYGDDHFCSHCRQERFETFDDLQSHIRDGCTAKKFACHHCEKKFFSNKALQLHLKQIDGKKFECSYCQKTFAQHGELTIHTRTHTGERPFKCTICSKTYKTASMRAAHMDAHIDGKTFQCTVCDKMLQSRTSYRNHMKRHTVGKSYQCEVCTKRFYTKYHVHMHTMKIHNKVKAMQDNFQNKFVSPERTQVPDEKYASVRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202983;
- 90% Identity
- iTF_00202983;
- 80% Identity
- -